Cluster: HRGMv2_4329_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4329
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4329_29 | HRGMv2_4329_29_11 | 9026 | 10420 | + | GH13_20 |
| CAZyme | HRGMv2_4329_29 | HRGMv2_4329_29_12 | 10701 | 12638 | + | CBM48 | GH13_9 |
| TF | HRGMv2_4329_29 | HRGMv2_4329_29_13 | 13272 | 13967 | + | Trans_reg_C |
| STP | HRGMv2_4329_29 | HRGMv2_4329_29_14 | 13979 | 16273 | + | HATPase_c | HisKA |
| TC | HRGMv2_4329_29 | HRGMv2_4329_29_15 | 16296 | 17651 | - | 2.A.66.1.33 |
Gene ID: HRGMv2_4329_29_11
Type: CAZyme
Location: 9026 - 10420 (+)
Type: CAZyme
Location: 9026 - 10420 (+)
Gene ID: HRGMv2_4329_29_12
Type: CAZyme
Location: 10701 - 12638 (+)
Type: CAZyme
Location: 10701 - 12638 (+)
Gene ID: HRGMv2_4329_29_13
Type: TF
Location: 13272 - 13967 (+)
Type: TF
Location: 13272 - 13967 (+)
Gene ID: HRGMv2_4329_29_14
Type: STP
Location: 13979 - 16273 (+)
Type: STP
Location: 13979 - 16273 (+)
Gene ID: HRGMv2_4329_29_15
Type: TC
Location: 16296 - 17651 (-)
Type: TC
Location: 16296 - 17651 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Copromonas
Species
Copromonas faecavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.