Cluster: HRGMv2_4329_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4329
- CGC Family ID: CGCFAM_00053
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4329_28 | HRGMv2_4329_28_18 | 15152 | 16207 | + | 9.A.11.1.1 |
| pfam | HRGMv2_4329_28 | HRGMv2_4329_28_19 | 16335 | 16691 | + | SpoVAC_SpoVAEB |
| TC | HRGMv2_4329_28 | HRGMv2_4329_28_20 | 16941 | 18014 | + | 3.A.1.14.21 |
| TC | HRGMv2_4329_28 | HRGMv2_4329_28_21 | 18029 | 18868 | + | 3.A.1.14.2 |
| STP | HRGMv2_4329_28 | HRGMv2_4329_28_22 | 18895 | 20100 | + | Peripla_BP_2 |
| CAZyme | HRGMv2_4329_28 | HRGMv2_4329_28_23 | 20252 | 22906 | - | GT51 |
Gene ID: HRGMv2_4329_28_18
Type: TC
Location: 15152 - 16207 (+)
Type: TC
Location: 15152 - 16207 (+)
Gene ID: HRGMv2_4329_28_19
Type: pfam
Location: 16335 - 16691 (+)
Type: pfam
Location: 16335 - 16691 (+)
Gene ID: HRGMv2_4329_28_20
Type: TC
Location: 16941 - 18014 (+)
Type: TC
Location: 16941 - 18014 (+)
Gene ID: HRGMv2_4329_28_21
Type: TC
Location: 18029 - 18868 (+)
Type: TC
Location: 18029 - 18868 (+)
Gene ID: HRGMv2_4329_28_22
Type: STP
Location: 18895 - 20100 (+)
Type: STP
Location: 18895 - 20100 (+)
Gene ID: HRGMv2_4329_28_23
Type: CAZyme
Location: 20252 - 22906 (-)
Type: CAZyme
Location: 20252 - 22906 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Copromonas
Species
Copromonas faecavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.