Cluster: HRGMv2_4329_CGC10
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4329
- CGC Family ID: CGCFAM_00056
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4329_16 | HRGMv2_4329_16_7 | 9458 | 10504 | - | 3.A.3.23.2 |
| TC | HRGMv2_4329_16 | HRGMv2_4329_16_8 | 10556 | 11542 | - | 3.A.3.23.2 |
| NULL(UNKNOWN) | HRGMv2_4329_16 | HRGMv2_4329_16_9 | 11658 | 12416 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4329_16 | HRGMv2_4329_16_10 | 12413 | 13483 | - | GT2 |
| TF | HRGMv2_4329_16 | HRGMv2_4329_16_11 | 13733 | 14401 | + | Trans_reg_C |
| STP | HRGMv2_4329_16 | HRGMv2_4329_16_12 | 14379 | 15947 | + | HATPase_c | HisKA |
| TC | HRGMv2_4329_16 | HRGMv2_4329_16_13 | 16046 | 16831 | + | 3.A.1.148.4 |
Gene ID: HRGMv2_4329_16_7
Type: TC
Location: 9458 - 10504 (-)
Type: TC
Location: 9458 - 10504 (-)
Gene ID: HRGMv2_4329_16_8
Type: TC
Location: 10556 - 11542 (-)
Type: TC
Location: 10556 - 11542 (-)
Gene ID: HRGMv2_4329_16_9
Type:
Location: 11658 - 12416 (-)
Type:
Location: 11658 - 12416 (-)
Gene ID: HRGMv2_4329_16_10
Type: CAZyme
Location: 12413 - 13483 (-)
Type: CAZyme
Location: 12413 - 13483 (-)
Gene ID: HRGMv2_4329_16_11
Type: TF
Location: 13733 - 14401 (+)
Type: TF
Location: 13733 - 14401 (+)
Gene ID: HRGMv2_4329_16_12
Type: STP
Location: 14379 - 15947 (+)
Type: STP
Location: 14379 - 15947 (+)
Gene ID: HRGMv2_4329_16_13
Type: TC
Location: 16046 - 16831 (+)
Type: TC
Location: 16046 - 16831 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Copromonas
Species
Copromonas faecavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.