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Cluster: HRGMv2_4329_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4329_1 HRGMv2_4329_1_10 11668 12738 - 2.A.86.1.3
pfam HRGMv2_4329_1 HRGMv2_4329_1_11 12870 13565 - PseudoU_synth_2
TC HRGMv2_4329_1 HRGMv2_4329_1_12 13761 14417 + 1.C.113.1.3
peptidase HRGMv2_4329_1 HRGMv2_4329_1_13 14419 16059 - S11.UPW
pfam HRGMv2_4329_1 HRGMv2_4329_1_14 16079 16390 - GIY-YIG
CAZyme HRGMv2_4329_1 HRGMv2_4329_1_15 16836 18404 - CBM50
TF HRGMv2_4329_1 HRGMv2_4329_1_16 18603 19379 + HTH_3
peptidase HRGMv2_4329_1 HRGMv2_4329_1_17 19561 20763 - M20.UPD
TC HRGMv2_4329_1 HRGMv2_4329_1_18 20779 22368 - 3.A.1.5.11
TC HRGMv2_4329_1 HRGMv2_4329_1_19 22391 23353 - 3.A.1.5.15
TC HRGMv2_4329_1 HRGMv2_4329_1_20 23346 24335 - 3.A.1.5.35
TC HRGMv2_4329_1 HRGMv2_4329_1_21 24350 25276 - 3.A.1.5.11
TC HRGMv2_4329_1 HRGMv2_4329_1_22 25281 26234 - 3.A.1.5.20
Gene ID: HRGMv2_4329_1_10
Type: TC
Location: 11668 - 12738 (-)
Gene ID: HRGMv2_4329_1_11
Type: pfam
Location: 12870 - 13565 (-)
Gene ID: HRGMv2_4329_1_12
Type: TC
Location: 13761 - 14417 (+)
Gene ID: HRGMv2_4329_1_13
Type: peptidase
Location: 14419 - 16059 (-)
Gene ID: HRGMv2_4329_1_14
Type: pfam
Location: 16079 - 16390 (-)
Gene ID: HRGMv2_4329_1_15
Type: CAZyme
Location: 16836 - 18404 (-)
Gene ID: HRGMv2_4329_1_16
Type: TF
Location: 18603 - 19379 (+)
Gene ID: HRGMv2_4329_1_17
Type: peptidase
Location: 19561 - 20763 (-)
Gene ID: HRGMv2_4329_1_18
Type: TC
Location: 20779 - 22368 (-)
Gene ID: HRGMv2_4329_1_19
Type: TC
Location: 22391 - 23353 (-)
Gene ID: HRGMv2_4329_1_20
Type: TC
Location: 23346 - 24335 (-)
Gene ID: HRGMv2_4329_1_21
Type: TC
Location: 24350 - 25276 (-)
Gene ID: HRGMv2_4329_1_22
Type: TC
Location: 25281 - 26234 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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