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Cluster: HRGMv2_4327_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4327_7 HRGMv2_4327_7_9 6619 7362 - 3.A.1.103.5
TC HRGMv2_4327_7 HRGMv2_4327_7_10 7371 8174 - 3.A.1.103.1
CAZyme HRGMv2_4327_7 HRGMv2_4327_7_11 8301 10508 - GT2
CAZyme HRGMv2_4327_7 HRGMv2_4327_7_12 10614 12797 - GT2
pfam HRGMv2_4327_7 HRGMv2_4327_7_13 12823 13230 - CTP_transf_like
CAZyme HRGMv2_4327_7 HRGMv2_4327_7_14 13419 19682 - CBM32 | CBM32 | CBM32 | GH81
CAZyme HRGMv2_4327_7 HRGMv2_4327_7_15 20004 22469 + GT4
Gene ID: HRGMv2_4327_7_9
Type: TC
Location: 6619 - 7362 (-)
Gene ID: HRGMv2_4327_7_10
Type: TC
Location: 7371 - 8174 (-)
Gene ID: HRGMv2_4327_7_11
Type: CAZyme
Location: 8301 - 10508 (-)
Gene ID: HRGMv2_4327_7_12
Type: CAZyme
Location: 10614 - 12797 (-)
Gene ID: HRGMv2_4327_7_13
Type: pfam
Location: 12823 - 13230 (-)
Gene ID: HRGMv2_4327_7_14
Type: CAZyme
Location: 13419 - 19682 (-)
Gene ID: HRGMv2_4327_7_15
Type: CAZyme
Location: 20004 - 22469 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4327_7_13 vegan > omnivore 5.36038 0.04105

🧭 Explore Read Mapping of CGC

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