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Cluster: HRGMv2_4327_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4327_6 HRGMv2_4327_6_6 6253 10128 + CBM32 | GH55_1
pfam HRGMv2_4327_6 HRGMv2_4327_6_7 10307 12064 + Metallophos
pfam HRGMv2_4327_6 HRGMv2_4327_6_8 12105 13247 + LRR_5
CAZyme HRGMv2_4327_6 HRGMv2_4327_6_9 13252 14223 + GH109
pfam HRGMv2_4327_6 HRGMv2_4327_6_10 14328 15320 + PBP_like_2 | PBP_like_2
TC HRGMv2_4327_6 HRGMv2_4327_6_11 15416 16243 + 3.A.1.7.5
TC HRGMv2_4327_6 HRGMv2_4327_6_12 16278 17120 + 3.A.1.7.5
TC HRGMv2_4327_6 HRGMv2_4327_6_13 17121 17870 + 3.A.1.7.5
Gene ID: HRGMv2_4327_6_6
Type: CAZyme
Location: 6253 - 10128 (+)
Gene ID: HRGMv2_4327_6_7
Type: pfam
Location: 10307 - 12064 (+)
Gene ID: HRGMv2_4327_6_8
Type: pfam
Location: 12105 - 13247 (+)
Gene ID: HRGMv2_4327_6_9
Type: CAZyme
Location: 13252 - 14223 (+)
Gene ID: HRGMv2_4327_6_10
Type: pfam
Location: 14328 - 15320 (+)
Gene ID: HRGMv2_4327_6_11
Type: TC
Location: 15416 - 16243 (+)
Gene ID: HRGMv2_4327_6_12
Type: TC
Location: 16278 - 17120 (+)
Gene ID: HRGMv2_4327_6_13
Type: TC
Location: 17121 - 17870 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4327_6_13 vegan > vegetarian 2.40365 0.00834

🧭 Explore Read Mapping of CGC

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