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Cluster: HRGMv2_4327_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4327_53 HRGMv2_4327_53_2 1124 2539 + GH30_1
CAZyme HRGMv2_4327_53 HRGMv2_4327_53_3 2785 4851 + GH5_54
TF HRGMv2_4327_53 HRGMv2_4327_53_4 4884 5840 + LacI
TC HRGMv2_4327_53 HRGMv2_4327_53_5 5870 7123 + 3.A.1.1.20
TC HRGMv2_4327_53 HRGMv2_4327_53_6 7204 8175 + 3.A.1.1.11
TC HRGMv2_4327_53 HRGMv2_4327_53_7 8150 9031 + 3.A.1.1.34
CAZyme HRGMv2_4327_53 HRGMv2_4327_53_8 9050 10537 + GH30_3
NULL(UNKNOWN) HRGMv2_4327_53 HRGMv2_4327_53_9 10547 14233 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4327_53 HRGMv2_4327_53_10 14246 15274 + GH30_1
Gene ID: HRGMv2_4327_53_2
Type: CAZyme
Location: 1124 - 2539 (+)
Gene ID: HRGMv2_4327_53_3
Type: CAZyme
Location: 2785 - 4851 (+)
Gene ID: HRGMv2_4327_53_4
Type: TF
Location: 4884 - 5840 (+)
Gene ID: HRGMv2_4327_53_5
Type: TC
Location: 5870 - 7123 (+)
Gene ID: HRGMv2_4327_53_6
Type: TC
Location: 7204 - 8175 (+)
Gene ID: HRGMv2_4327_53_7
Type: TC
Location: 8150 - 9031 (+)
Gene ID: HRGMv2_4327_53_8
Type: CAZyme
Location: 9050 - 10537 (+)
Gene ID: HRGMv2_4327_53_9
Type:
Location: 10547 - 14233 (+)
Gene ID: HRGMv2_4327_53_10
Type: CAZyme
Location: 14246 - 15274 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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