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Cluster: HRGMv2_4327_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4327_13 HRGMv2_4327_13_31 31618 33252 + 4.C.1.1.6
CAZyme HRGMv2_4327_13 HRGMv2_4327_13_32 33383 36544 + CBM6
pfam HRGMv2_4327_13 HRGMv2_4327_13_33 36683 37570 + YitT_membrane | DUF2179
pfam HRGMv2_4327_13 HRGMv2_4327_13_34 37766 40453 + YfhO
CAZyme HRGMv2_4327_13 HRGMv2_4327_13_35 40510 42414 - CBM6
TF HRGMv2_4327_13 HRGMv2_4327_13_36 42647 43180 + HTH_3
TC HRGMv2_4327_13 HRGMv2_4327_13_37 43153 44244 + 3.A.1.11.8
TC HRGMv2_4327_13 HRGMv2_4327_13_38 44255 45085 + 3.A.1.11.1
TC HRGMv2_4327_13 HRGMv2_4327_13_39 45082 46959 + 3.A.1.11.7
TC HRGMv2_4327_13 HRGMv2_4327_13_40 47173 48705 + 4.C.1.1.6
TC HRGMv2_4327_13 HRGMv2_4327_13_41 48705 49850 + 2.A.50.2.1
pfam HRGMv2_4327_13 HRGMv2_4327_13_42 49890 50126 + PP-binding
pfam HRGMv2_4327_13 HRGMv2_4327_13_43 50153 51322 + DltD
TC HRGMv2_4327_13 HRGMv2_4327_13_44 51540 52124 + 4.F.1.1.7
Gene ID: HRGMv2_4327_13_31
Type: TC
Location: 31618 - 33252 (+)
Gene ID: HRGMv2_4327_13_32
Type: CAZyme
Location: 33383 - 36544 (+)
Gene ID: HRGMv2_4327_13_33
Type: pfam
Location: 36683 - 37570 (+)
Gene ID: HRGMv2_4327_13_34
Type: pfam
Location: 37766 - 40453 (+)
Gene ID: HRGMv2_4327_13_35
Type: CAZyme
Location: 40510 - 42414 (-)
Gene ID: HRGMv2_4327_13_36
Type: TF
Location: 42647 - 43180 (+)
Gene ID: HRGMv2_4327_13_37
Type: TC
Location: 43153 - 44244 (+)
Gene ID: HRGMv2_4327_13_38
Type: TC
Location: 44255 - 45085 (+)
Gene ID: HRGMv2_4327_13_39
Type: TC
Location: 45082 - 46959 (+)
Gene ID: HRGMv2_4327_13_40
Type: TC
Location: 47173 - 48705 (+)
Gene ID: HRGMv2_4327_13_41
Type: TC
Location: 48705 - 49850 (+)
Gene ID: HRGMv2_4327_13_42
Type: pfam
Location: 49890 - 50126 (+)
Gene ID: HRGMv2_4327_13_43
Type: pfam
Location: 50153 - 51322 (+)
Gene ID: HRGMv2_4327_13_44
Type: TC
Location: 51540 - 52124 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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