Cluster: HRGMv2_4327_CGC1
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 13
- Substrate:
- Genome ID: HRGMv2_4327
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4327_1 | HRGMv2_4327_1_3 | 3370 | 13176 | - | CBM32 |
| CAZyme | HRGMv2_4327_1 | HRGMv2_4327_1_4 | 13596 | 16358 | - | GH5_54 |
| NULL(UNKNOWN) | HRGMv2_4327_1 | HRGMv2_4327_1_5 | 16422 | 16607 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4327_1 | HRGMv2_4327_1_6 | 16627 | 24009 | - | CBM32 | CBM32 | CBM32 | CBM32 | CBM6 |
| pfam | HRGMv2_4327_1 | HRGMv2_4327_1_7 | 24327 | 28952 | - | NPCBM | CotH |
| NULL(UNKNOWN) | HRGMv2_4327_1 | HRGMv2_4327_1_8 | 29004 | 29189 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4327_1 | HRGMv2_4327_1_9 | 29207 | 36046 | - | CBM32 | CBM32 | CBM6 |
| CAZyme | HRGMv2_4327_1 | HRGMv2_4327_1_10 | 36437 | 39112 | - | CBM13 | CBM6 | CBM6 |
| CAZyme | HRGMv2_4327_1 | HRGMv2_4327_1_11 | 39309 | 42791 | - | CBM6 | CBM6 | GH76 |
| CAZyme | HRGMv2_4327_1 | HRGMv2_4327_1_12 | 42883 | 46506 | - | GH16_3 |
| NULL(UNKNOWN) | HRGMv2_4327_1 | HRGMv2_4327_1_13 | 46659 | 47186 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4327_1 | HRGMv2_4327_1_14 | 47212 | 49191 | - | CBM32 |
| CAZyme | HRGMv2_4327_1 | HRGMv2_4327_1_15 | 49570 | 50472 | - | GH17 |
| CAZyme | HRGMv2_4327_1 | HRGMv2_4327_1_16 | 50529 | 53225 | - | GH94 |
| CAZyme | HRGMv2_4327_1 | HRGMv2_4327_1_17 | 53386 | 56565 | - | GH161 |
| TF | HRGMv2_4327_1 | HRGMv2_4327_1_18 | 56598 | 57599 | - | LacI |
| CAZyme | HRGMv2_4327_1 | HRGMv2_4327_1_19 | 57703 | 59109 | - | GH16_3 |
| CAZyme | HRGMv2_4327_1 | HRGMv2_4327_1_20 | 59204 | 60592 | - | GH16_3 |
| TC | HRGMv2_4327_1 | HRGMv2_4327_1_21 | 60664 | 61620 | - | 3.A.1.1.47 |
Gene ID: HRGMv2_4327_1_3
Type: CAZyme
Location: 3370 - 13176 (-)
Type: CAZyme
Location: 3370 - 13176 (-)
Gene ID: HRGMv2_4327_1_4
Type: CAZyme
Location: 13596 - 16358 (-)
Type: CAZyme
Location: 13596 - 16358 (-)
Gene ID: HRGMv2_4327_1_5
Type:
Location: 16422 - 16607 (-)
Type:
Location: 16422 - 16607 (-)
Gene ID: HRGMv2_4327_1_6
Type: CAZyme
Location: 16627 - 24009 (-)
Type: CAZyme
Location: 16627 - 24009 (-)
Gene ID: HRGMv2_4327_1_7
Type: pfam
Location: 24327 - 28952 (-)
Type: pfam
Location: 24327 - 28952 (-)
Gene ID: HRGMv2_4327_1_8
Type:
Location: 29004 - 29189 (-)
Type:
Location: 29004 - 29189 (-)
Gene ID: HRGMv2_4327_1_9
Type: CAZyme
Location: 29207 - 36046 (-)
Type: CAZyme
Location: 29207 - 36046 (-)
Gene ID: HRGMv2_4327_1_10
Type: CAZyme
Location: 36437 - 39112 (-)
Type: CAZyme
Location: 36437 - 39112 (-)
Gene ID: HRGMv2_4327_1_11
Type: CAZyme
Location: 39309 - 42791 (-)
Type: CAZyme
Location: 39309 - 42791 (-)
Gene ID: HRGMv2_4327_1_12
Type: CAZyme
Location: 42883 - 46506 (-)
Type: CAZyme
Location: 42883 - 46506 (-)
Gene ID: HRGMv2_4327_1_13
Type:
Location: 46659 - 47186 (-)
Type:
Location: 46659 - 47186 (-)
Gene ID: HRGMv2_4327_1_14
Type: CAZyme
Location: 47212 - 49191 (-)
Type: CAZyme
Location: 47212 - 49191 (-)
Gene ID: HRGMv2_4327_1_15
Type: CAZyme
Location: 49570 - 50472 (-)
Type: CAZyme
Location: 49570 - 50472 (-)
Gene ID: HRGMv2_4327_1_16
Type: CAZyme
Location: 50529 - 53225 (-)
Type: CAZyme
Location: 50529 - 53225 (-)
Gene ID: HRGMv2_4327_1_17
Type: CAZyme
Location: 53386 - 56565 (-)
Type: CAZyme
Location: 53386 - 56565 (-)
Gene ID: HRGMv2_4327_1_18
Type: TF
Location: 56598 - 57599 (-)
Type: TF
Location: 56598 - 57599 (-)
Gene ID: HRGMv2_4327_1_19
Type: CAZyme
Location: 57703 - 59109 (-)
Type: CAZyme
Location: 57703 - 59109 (-)
Gene ID: HRGMv2_4327_1_20
Type: CAZyme
Location: 59204 - 60592 (-)
Type: CAZyme
Location: 59204 - 60592 (-)
Gene ID: HRGMv2_4327_1_21
Type: TC
Location: 60664 - 61620 (-)
Type: TC
Location: 60664 - 61620 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Eubacterium_G
Species
Eubacterium_G sp937958975
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.