Cluster: HRGMv2_4326_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4326
- CGC Family ID: CGCFAM_00027
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4326_9 | HRGMv2_4326_9_22 | 23993 | 25732 | + | 3.A.1.135.5 |
| TC | HRGMv2_4326_9 | HRGMv2_4326_9_23 | 25754 | 27640 | + | 3.A.1.135.5 |
| TF | HRGMv2_4326_9 | HRGMv2_4326_9_24 | 27646 | 28524 | - | HTH_6 |
| CAZyme | HRGMv2_4326_9 | HRGMv2_4326_9_25 | 28888 | 30315 | + | GH1 |
| TC | HRGMv2_4326_9 | HRGMv2_4326_9_26 | 30339 | 32210 | + | 4.A.1.2.11 |
| pfam | HRGMv2_4326_9 | HRGMv2_4326_9_27 | 32327 | 33052 | + | TauE |
| TC | HRGMv2_4326_9 | HRGMv2_4326_9_28 | 33185 | 35041 | - | 4.A.2.1.2 |
Gene ID: HRGMv2_4326_9_22
Type: TC
Location: 23993 - 25732 (+)
Type: TC
Location: 23993 - 25732 (+)
Gene ID: HRGMv2_4326_9_23
Type: TC
Location: 25754 - 27640 (+)
Type: TC
Location: 25754 - 27640 (+)
Gene ID: HRGMv2_4326_9_24
Type: TF
Location: 27646 - 28524 (-)
Type: TF
Location: 27646 - 28524 (-)
Gene ID: HRGMv2_4326_9_25
Type: CAZyme
Location: 28888 - 30315 (+)
Type: CAZyme
Location: 28888 - 30315 (+)
Gene ID: HRGMv2_4326_9_26
Type: TC
Location: 30339 - 32210 (+)
Type: TC
Location: 30339 - 32210 (+)
Gene ID: HRGMv2_4326_9_27
Type: pfam
Location: 32327 - 33052 (+)
Type: pfam
Location: 32327 - 33052 (+)
Gene ID: HRGMv2_4326_9_28
Type: TC
Location: 33185 - 35041 (-)
Type: TC
Location: 33185 - 35041 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Anaerobutyricum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.