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Cluster: HRGMv2_4325_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4325_20 HRGMv2_4325_20_9 7510 9294 + GH13_9
NULL(UNKNOWN) HRGMv2_4325_20 HRGMv2_4325_20_10 9450 11150 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4325_20 HRGMv2_4325_20_11 11301 12857 - 3.A.1.121.4
pfam HRGMv2_4325_20 HRGMv2_4325_20_12 13028 13840 - NAT_N | GNAT_C
pfam HRGMv2_4325_20 HRGMv2_4325_20_13 13842 15110 - GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
TC HRGMv2_4325_20 HRGMv2_4325_20_14 15131 15988 - 3.A.1.1.47
TC HRGMv2_4325_20 HRGMv2_4325_20_15 15985 16917 - 3.A.1.1.47
TC HRGMv2_4325_20 HRGMv2_4325_20_16 17000 18280 - 3.A.1.1.47
TC HRGMv2_4325_20 HRGMv2_4325_20_17 18433 19692 - 3.A.1.1.47
TF HRGMv2_4325_20 HRGMv2_4325_20_18 19679 20443 - HTH_AraC | HTH_AraC
STP HRGMv2_4325_20 HRGMv2_4325_20_19 20431 22185 - HATPase_c | dCache_1
CAZyme HRGMv2_4325_20 HRGMv2_4325_20_20 22221 23861 - GH123
TC HRGMv2_4325_20 HRGMv2_4325_20_21 23948 25303 - 3.A.1.1.11
TC HRGMv2_4325_20 HRGMv2_4325_20_22 25317 26225 - 3.A.1.1.30
TC HRGMv2_4325_20 HRGMv2_4325_20_23 26491 27810 + 3.A.1.1.41
TC HRGMv2_4325_20 HRGMv2_4325_20_24 27980 29929 + 8.A.59.2.1
Gene ID: HRGMv2_4325_20_9
Type: CAZyme
Location: 7510 - 9294 (+)
Gene ID: HRGMv2_4325_20_10
Type:
Location: 9450 - 11150 (-)
Gene ID: HRGMv2_4325_20_11
Type: TC
Location: 11301 - 12857 (-)
Gene ID: HRGMv2_4325_20_12
Type: pfam
Location: 13028 - 13840 (-)
Gene ID: HRGMv2_4325_20_13
Type: pfam
Location: 13842 - 15110 (-)
Gene ID: HRGMv2_4325_20_14
Type: TC
Location: 15131 - 15988 (-)
Gene ID: HRGMv2_4325_20_15
Type: TC
Location: 15985 - 16917 (-)
Gene ID: HRGMv2_4325_20_16
Type: TC
Location: 17000 - 18280 (-)
Gene ID: HRGMv2_4325_20_17
Type: TC
Location: 18433 - 19692 (-)
Gene ID: HRGMv2_4325_20_18
Type: TF
Location: 19679 - 20443 (-)
Gene ID: HRGMv2_4325_20_19
Type: STP
Location: 20431 - 22185 (-)
Gene ID: HRGMv2_4325_20_20
Type: CAZyme
Location: 22221 - 23861 (-)
Gene ID: HRGMv2_4325_20_21
Type: TC
Location: 23948 - 25303 (-)
Gene ID: HRGMv2_4325_20_22
Type: TC
Location: 25317 - 26225 (-)
Gene ID: HRGMv2_4325_20_23
Type: TC
Location: 26491 - 27810 (+)
Gene ID: HRGMv2_4325_20_24
Type: TC
Location: 27980 - 29929 (+)

Taxonomic Lineage

Domain
Bacteria

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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