Cluster: HRGMv2_4324_CGC23
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4324
- CGC Family ID: CGCFAM_10591
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4324_30 | HRGMv2_4324_30_2 | 2014 | 3402 | - | 2.A.66.1.25 |
| pfam | HRGMv2_4324_30 | HRGMv2_4324_30_3 | 3637 | 4203 | - | Zeta_toxin | KTI12 | AAA_33 |
| pfam | HRGMv2_4324_30 | HRGMv2_4324_30_4 | 4436 | 5293 | - | MYG1_exonuc |
| TC | HRGMv2_4324_30 | HRGMv2_4324_30_5 | 5322 | 6488 | - | 2.A.4.7.6 |
| TC | HRGMv2_4324_30 | HRGMv2_4324_30_6 | 6639 | 8276 | + | 3.A.18.1.1 |
| pfam | HRGMv2_4324_30 | HRGMv2_4324_30_7 | 8360 | 9217 | + | DAP_epimerase | DAP_epimerase | PhzC-PhzF |
| NULL(UNKNOWN) | HRGMv2_4324_30 | HRGMv2_4324_30_8 | 9226 | 9453 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4324_30 | HRGMv2_4324_30_9 | 9597 | 10595 | + | GH5_2 |
| NULL(UNKNOWN) | HRGMv2_4324_30 | HRGMv2_4324_30_10 | 10608 | 10697 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_4324_30 | HRGMv2_4324_30_11 | 10648 | 11931 | - | SBP_bac_1 |
| CAZyme | HRGMv2_4324_30 | HRGMv2_4324_30_12 | 12117 | 16718 | - | CBM23 | CBM27 | GH26 |
| pfam | HRGMv2_4324_30 | HRGMv2_4324_30_13 | 16967 | 17815 | - | PHP |
| CAZyme | HRGMv2_4324_30 | HRGMv2_4324_30_14 | 17835 | 19754 | - | GH51_2 |
| TC | HRGMv2_4324_30 | HRGMv2_4324_30_15 | 19935 | 22523 | - | 3.A.9.1.2 |
| NULL(UNKNOWN) | HRGMv2_4324_30 | HRGMv2_4324_30_16 | 22671 | 23441 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4324_30 | HRGMv2_4324_30_17 | 23690 | 24286 | - | 2.A.115.2.14 |
Gene ID: HRGMv2_4324_30_2
Type: TC
Location: 2014 - 3402 (-)
Type: TC
Location: 2014 - 3402 (-)
Gene ID: HRGMv2_4324_30_3
Type: pfam
Location: 3637 - 4203 (-)
Type: pfam
Location: 3637 - 4203 (-)
Gene ID: HRGMv2_4324_30_4
Type: pfam
Location: 4436 - 5293 (-)
Type: pfam
Location: 4436 - 5293 (-)
Gene ID: HRGMv2_4324_30_5
Type: TC
Location: 5322 - 6488 (-)
Type: TC
Location: 5322 - 6488 (-)
Gene ID: HRGMv2_4324_30_6
Type: TC
Location: 6639 - 8276 (+)
Type: TC
Location: 6639 - 8276 (+)
Gene ID: HRGMv2_4324_30_7
Type: pfam
Location: 8360 - 9217 (+)
Type: pfam
Location: 8360 - 9217 (+)
Gene ID: HRGMv2_4324_30_8
Type:
Location: 9226 - 9453 (-)
Type:
Location: 9226 - 9453 (-)
Gene ID: HRGMv2_4324_30_9
Type: CAZyme
Location: 9597 - 10595 (+)
Type: CAZyme
Location: 9597 - 10595 (+)
Gene ID: HRGMv2_4324_30_10
Type:
Location: 10608 - 10697 (-)
Type:
Location: 10608 - 10697 (-)
Gene ID: HRGMv2_4324_30_11
Type: STP
Location: 10648 - 11931 (-)
Type: STP
Location: 10648 - 11931 (-)
Gene ID: HRGMv2_4324_30_12
Type: CAZyme
Location: 12117 - 16718 (-)
Type: CAZyme
Location: 12117 - 16718 (-)
Gene ID: HRGMv2_4324_30_13
Type: pfam
Location: 16967 - 17815 (-)
Type: pfam
Location: 16967 - 17815 (-)
Gene ID: HRGMv2_4324_30_14
Type: CAZyme
Location: 17835 - 19754 (-)
Type: CAZyme
Location: 17835 - 19754 (-)
Gene ID: HRGMv2_4324_30_15
Type: TC
Location: 19935 - 22523 (-)
Type: TC
Location: 19935 - 22523 (-)
Gene ID: HRGMv2_4324_30_16
Type:
Location: 22671 - 23441 (-)
Type:
Location: 22671 - 23441 (-)
Gene ID: HRGMv2_4324_30_17
Type: TC
Location: 23690 - 24286 (-)
Type: TC
Location: 23690 - 24286 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA3212
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.