Cluster: HRGMv2_4324_CGC16
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_4324
- CGC Family ID: CGCFAM_06405
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4324_17 | HRGMv2_4324_17_11 | 12898 | 14070 | - | GH130_1 |
| pfam | HRGMv2_4324_17 | HRGMv2_4324_17_12 | 14088 | 15254 | - | GlcNAc_2-epim | Beta-AFase-like_GH127_cat |
| CAZyme | HRGMv2_4324_17 | HRGMv2_4324_17_13 | 15348 | 16370 | - | GH130_2 |
| TC | HRGMv2_4324_17 | HRGMv2_4324_17_14 | 16496 | 17341 | - | 3.A.1.1.18 |
| TC | HRGMv2_4324_17 | HRGMv2_4324_17_15 | 17348 | 18334 | - | 3.A.1.1.46 |
| TC | HRGMv2_4324_17 | HRGMv2_4324_17_16 | 18357 | 19784 | - | 3.A.1.1.44 |
| TC | HRGMv2_4324_17 | HRGMv2_4324_17_17 | 20141 | 20818 | + | 9.B.28.1.2 |
| TF | HRGMv2_4324_17 | HRGMv2_4324_17_18 | 21066 | 22076 | - | LacI |
| CAZyme | HRGMv2_4324_17 | HRGMv2_4324_17_19 | 22142 | 24334 | - | GH36 |
| pfam | HRGMv2_4324_17 | HRGMv2_4324_17_20 | 24474 | 26198 | - | PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| CAZyme | HRGMv2_4324_17 | HRGMv2_4324_17_21 | 26349 | 27917 | - | CE12 |
| CAZyme | HRGMv2_4324_17 | HRGMv2_4324_17_22 | 28050 | 29336 | - | CE12 |
| TC | HRGMv2_4324_17 | HRGMv2_4324_17_23 | 29378 | 30694 | - | 2.A.86.1.8 |
Gene ID: HRGMv2_4324_17_11
Type: CAZyme
Location: 12898 - 14070 (-)
Type: CAZyme
Location: 12898 - 14070 (-)
Gene ID: HRGMv2_4324_17_12
Type: pfam
Location: 14088 - 15254 (-)
Type: pfam
Location: 14088 - 15254 (-)
Gene ID: HRGMv2_4324_17_13
Type: CAZyme
Location: 15348 - 16370 (-)
Type: CAZyme
Location: 15348 - 16370 (-)
Gene ID: HRGMv2_4324_17_14
Type: TC
Location: 16496 - 17341 (-)
Type: TC
Location: 16496 - 17341 (-)
Gene ID: HRGMv2_4324_17_15
Type: TC
Location: 17348 - 18334 (-)
Type: TC
Location: 17348 - 18334 (-)
Gene ID: HRGMv2_4324_17_16
Type: TC
Location: 18357 - 19784 (-)
Type: TC
Location: 18357 - 19784 (-)
Gene ID: HRGMv2_4324_17_17
Type: TC
Location: 20141 - 20818 (+)
Type: TC
Location: 20141 - 20818 (+)
Gene ID: HRGMv2_4324_17_18
Type: TF
Location: 21066 - 22076 (-)
Type: TF
Location: 21066 - 22076 (-)
Gene ID: HRGMv2_4324_17_19
Type: CAZyme
Location: 22142 - 24334 (-)
Type: CAZyme
Location: 22142 - 24334 (-)
Gene ID: HRGMv2_4324_17_20
Type: pfam
Location: 24474 - 26198 (-)
Type: pfam
Location: 24474 - 26198 (-)
Gene ID: HRGMv2_4324_17_21
Type: CAZyme
Location: 26349 - 27917 (-)
Type: CAZyme
Location: 26349 - 27917 (-)
Gene ID: HRGMv2_4324_17_22
Type: CAZyme
Location: 28050 - 29336 (-)
Type: CAZyme
Location: 28050 - 29336 (-)
Gene ID: HRGMv2_4324_17_23
Type: TC
Location: 29378 - 30694 (-)
Type: TC
Location: 29378 - 30694 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA3212
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.