Cluster: HRGMv2_4322_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4322
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4322_44 | HRGMv2_4322_44_10 | 8115 | 10001 | - | GH136 |
| TC | HRGMv2_4322_44 | HRGMv2_4322_44_11 | 10001 | 10807 | - | 3.A.1.1.4 |
| TC | HRGMv2_4322_44 | HRGMv2_4322_44_12 | 10800 | 11678 | - | 3.A.1.1.4 |
| TC | HRGMv2_4322_44 | HRGMv2_4322_44_13 | 11762 | 13111 | - | 3.A.1.1.4 |
| CAZyme | HRGMv2_4322_44 | HRGMv2_4322_44_14 | 13187 | 15343 | - | GH112 |
Gene ID: HRGMv2_4322_44_10
Type: CAZyme
Location: 8115 - 10001 (-)
Type: CAZyme
Location: 8115 - 10001 (-)
Gene ID: HRGMv2_4322_44_11
Type: TC
Location: 10001 - 10807 (-)
Type: TC
Location: 10001 - 10807 (-)
Gene ID: HRGMv2_4322_44_12
Type: TC
Location: 10800 - 11678 (-)
Type: TC
Location: 10800 - 11678 (-)
Gene ID: HRGMv2_4322_44_13
Type: TC
Location: 11762 - 13111 (-)
Type: TC
Location: 11762 - 13111 (-)
Gene ID: HRGMv2_4322_44_14
Type: CAZyme
Location: 13187 - 15343 (-)
Type: CAZyme
Location: 13187 - 15343 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Oribacterium
Species
Oribacterium sp934279105
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4322_44_12 | vegetarian > omnivore | 1.64489 | 0.01285 |
| HRGMv2_4322_44_12 | vegetarian > vegan | 1.79573 | 0.02258 |