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Cluster: HRGMv2_4322_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4322_14 HRGMv2_4322_14_10 12819 13751 + GT2
TC HRGMv2_4322_14 HRGMv2_4322_14_11 14290 15405 + 3.A.1.2.3
TC HRGMv2_4322_14 HRGMv2_4322_14_12 15513 17021 + 3.A.1.2.3
TC HRGMv2_4322_14 HRGMv2_4322_14_13 17053 18057 + 3.A.1.2.3
NULL(UNKNOWN) HRGMv2_4322_14 HRGMv2_4322_14_14 18222 18620 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_4322_14 HRGMv2_4322_14_15 18633 20264 + HTH_AraC | HTH_AraC
TC HRGMv2_4322_14 HRGMv2_4322_14_16 20482 22413 + 9.B.33.1.1
STP HRGMv2_4322_14 HRGMv2_4322_14_17 22406 23383 + Peripla_BP_1
TC HRGMv2_4322_14 HRGMv2_4322_14_18 23529 24572 + 3.A.1.2.3
pfam HRGMv2_4322_14 HRGMv2_4322_14_19 24687 25313 - DUF6553
TC HRGMv2_4322_14 HRGMv2_4322_14_20 25521 27071 + 2.A.15.1.4
TC HRGMv2_4322_14 HRGMv2_4322_14_21 27487 28260 + 9.B.28.1.2
Gene ID: HRGMv2_4322_14_10
Type: CAZyme
Location: 12819 - 13751 (+)
Gene ID: HRGMv2_4322_14_11
Type: TC
Location: 14290 - 15405 (+)
Gene ID: HRGMv2_4322_14_12
Type: TC
Location: 15513 - 17021 (+)
Gene ID: HRGMv2_4322_14_13
Type: TC
Location: 17053 - 18057 (+)
Gene ID: HRGMv2_4322_14_14
Type:
Location: 18222 - 18620 (+)
Gene ID: HRGMv2_4322_14_15
Type: TF
Location: 18633 - 20264 (+)
Gene ID: HRGMv2_4322_14_16
Type: TC
Location: 20482 - 22413 (+)
Gene ID: HRGMv2_4322_14_17
Type: STP
Location: 22406 - 23383 (+)
Gene ID: HRGMv2_4322_14_18
Type: TC
Location: 23529 - 24572 (+)
Gene ID: HRGMv2_4322_14_19
Type: pfam
Location: 24687 - 25313 (-)
Gene ID: HRGMv2_4322_14_20
Type: TC
Location: 25521 - 27071 (+)
Gene ID: HRGMv2_4322_14_21
Type: TC
Location: 27487 - 28260 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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