Cluster: HRGMv2_4322_CGC1

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_4322_1	HRGMv2_4322_1_16	16240	17790	-	2.A.68.1.2
pfam	HRGMv2_4322_1	HRGMv2_4322_1_17	17874	19184	-	SDH_alpha
peptidase	HRGMv2_4322_1	HRGMv2_4322_1_18	19660	20832	-	M20.UPD
TC	HRGMv2_4322_1	HRGMv2_4322_1_19	20937	22346	-	2.A.118.1.4
pfam	HRGMv2_4322_1	HRGMv2_4322_1_20	22364	23674	-	SDH_alpha
TF	HRGMv2_4322_1	HRGMv2_4322_1_21	24282	24932	-	GntR
TC	HRGMv2_4322_1	HRGMv2_4322_1_22	25047	25811	-	3.A.16.1.3
pfam	HRGMv2_4322_1	HRGMv2_4322_1_23	26002	26751	-	APH
CAZyme	HRGMv2_4322_1	HRGMv2_4322_1_24	26854	28992	-	GH13_9
CAZyme	HRGMv2_4322_1	HRGMv2_4322_1_25	29198	30520	-	GH13_20

Gene ID: HRGMv2_4322_1_16
Type: TC
Location: 16240 - 17790 (-)

Gene ID: HRGMv2_4322_1_17
Type: pfam
Location: 17874 - 19184 (-)

Gene ID: HRGMv2_4322_1_18
Type: peptidase
Location: 19660 - 20832 (-)

Gene ID: HRGMv2_4322_1_19
Type: TC
Location: 20937 - 22346 (-)

Gene ID: HRGMv2_4322_1_20
Type: pfam
Location: 22364 - 23674 (-)

Gene ID: HRGMv2_4322_1_21
Type: TF
Location: 24282 - 24932 (-)

Gene ID: HRGMv2_4322_1_22
Type: TC
Location: 25047 - 25811 (-)

Gene ID: HRGMv2_4322_1_23
Type: pfam
Location: 26002 - 26751 (-)

Gene ID: HRGMv2_4322_1_24
Type: CAZyme
Location: 26854 - 28992 (-)

Gene ID: HRGMv2_4322_1_25
Type: CAZyme
Location: 29198 - 30520 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_4322_1_17	vegan > omnivore	1.44374	0.03904
HRGMv2_4322_1_18	vegan > omnivore	1.79524	0.03904
HRGMv2_4322_1_19	vegan > omnivore	1.84198	0.03904
HRGMv2_4322_1_20	vegan > omnivore	1.53047	0.03904