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Cluster: HRGMv2_4320_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4320_160 HRGMv2_4320_160_20 19217 19723 - 3.A.1.26.5
pfam HRGMv2_4320_160 HRGMv2_4320_160_21 19737 21041 - ThiC_Rad_SAM
TC HRGMv2_4320_160 HRGMv2_4320_160_22 21673 23193 - 1.B.52.2.1
TC HRGMv2_4320_160 HRGMv2_4320_160_23 23360 25075 - 2.A.114.1.3
TC HRGMv2_4320_160 HRGMv2_4320_160_24 25630 26919 - 9.B.174.1.1
STP HRGMv2_4320_160 HRGMv2_4320_160_25 26963 28261 - Peptidase_M23
pfam HRGMv2_4320_160 HRGMv2_4320_160_26 28332 29177 - FtsX | FtsX_ECD
TC HRGMv2_4320_160 HRGMv2_4320_160_27 29230 29913 - 3.A.1.140.1
pfam HRGMv2_4320_160 HRGMv2_4320_160_28 29931 31019 - HTH_30 | GGDEF_2
TC HRGMv2_4320_160 HRGMv2_4320_160_29 31231 32112 - 2.A.115.1.2
CAZyme HRGMv2_4320_160 HRGMv2_4320_160_30 32122 32796 - GT26
Gene ID: HRGMv2_4320_160_20
Type: TC
Location: 19217 - 19723 (-)
Gene ID: HRGMv2_4320_160_21
Type: pfam
Location: 19737 - 21041 (-)
Gene ID: HRGMv2_4320_160_22
Type: TC
Location: 21673 - 23193 (-)
Gene ID: HRGMv2_4320_160_23
Type: TC
Location: 23360 - 25075 (-)
Gene ID: HRGMv2_4320_160_24
Type: TC
Location: 25630 - 26919 (-)
Gene ID: HRGMv2_4320_160_25
Type: STP
Location: 26963 - 28261 (-)
Gene ID: HRGMv2_4320_160_26
Type: pfam
Location: 28332 - 29177 (-)
Gene ID: HRGMv2_4320_160_27
Type: TC
Location: 29230 - 29913 (-)
Gene ID: HRGMv2_4320_160_28
Type: pfam
Location: 29931 - 31019 (-)
Gene ID: HRGMv2_4320_160_29
Type: TC
Location: 31231 - 32112 (-)
Gene ID: HRGMv2_4320_160_30
Type: CAZyme
Location: 32122 - 32796 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Petralouisia
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4320_160_23 vegetarian > vegan 1.06964 0.00694

🧭 Explore Read Mapping of CGC

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