Cluster: HRGMv2_4320_CGC36
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_4320
- CGC Family ID: CGCFAM_00736
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4320_134 | HRGMv2_4320_134_1 | 2 | 823 | + | 3.A.1.1.29 |
| TC | HRGMv2_4320_134 | HRGMv2_4320_134_2 | 839 | 1759 | + | 3.A.1.1.29 |
| NULL(UNKNOWN) | HRGMv2_4320_134 | HRGMv2_4320_134_3 | 1776 | 3551 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4320_134 | HRGMv2_4320_134_4 | 3643 | 5661 | + | GH42 |
| NULL(UNKNOWN) | HRGMv2_4320_134 | HRGMv2_4320_134_5 | 5858 | 5974 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4320_134 | HRGMv2_4320_134_6 | 5925 | 7907 | + | CBM65 | CBM65 | GH5_4 |
| TF | HRGMv2_4320_134 | HRGMv2_4320_134_7 | 7967 | 9034 | - | HTH_AraC | HTH_AraC |
| STP | HRGMv2_4320_134 | HRGMv2_4320_134_8 | 9046 | 9516 | - | Response_reg |
| TC | HRGMv2_4320_134 | HRGMv2_4320_134_9 | 9513 | 11315 | - | 8.A.59.2.1 |
| pfam | HRGMv2_4320_134 | HRGMv2_4320_134_10 | 11541 | 12194 | + | TAL_FSA |
| CAZyme | HRGMv2_4320_134 | HRGMv2_4320_134_11 | 12197 | 13678 | + | GH29 |
| CAZyme | HRGMv2_4320_134 | HRGMv2_4320_134_12 | 13794 | 16124 | + | GH31_3 |
| CAZyme | HRGMv2_4320_134 | HRGMv2_4320_134_13 | 16126 | 18213 | + | GH3 |
Gene ID: HRGMv2_4320_134_1
Type: TC
Location: 2 - 823 (+)
Type: TC
Location: 2 - 823 (+)
Gene ID: HRGMv2_4320_134_2
Type: TC
Location: 839 - 1759 (+)
Type: TC
Location: 839 - 1759 (+)
Gene ID: HRGMv2_4320_134_3
Type:
Location: 1776 - 3551 (+)
Type:
Location: 1776 - 3551 (+)
Gene ID: HRGMv2_4320_134_4
Type: CAZyme
Location: 3643 - 5661 (+)
Type: CAZyme
Location: 3643 - 5661 (+)
Gene ID: HRGMv2_4320_134_5
Type:
Location: 5858 - 5974 (+)
Type:
Location: 5858 - 5974 (+)
Gene ID: HRGMv2_4320_134_6
Type: CAZyme
Location: 5925 - 7907 (+)
Type: CAZyme
Location: 5925 - 7907 (+)
Gene ID: HRGMv2_4320_134_7
Type: TF
Location: 7967 - 9034 (-)
Type: TF
Location: 7967 - 9034 (-)
Gene ID: HRGMv2_4320_134_8
Type: STP
Location: 9046 - 9516 (-)
Type: STP
Location: 9046 - 9516 (-)
Gene ID: HRGMv2_4320_134_9
Type: TC
Location: 9513 - 11315 (-)
Type: TC
Location: 9513 - 11315 (-)
Gene ID: HRGMv2_4320_134_10
Type: pfam
Location: 11541 - 12194 (+)
Type: pfam
Location: 11541 - 12194 (+)
Gene ID: HRGMv2_4320_134_11
Type: CAZyme
Location: 12197 - 13678 (+)
Type: CAZyme
Location: 12197 - 13678 (+)
Gene ID: HRGMv2_4320_134_12
Type: CAZyme
Location: 13794 - 16124 (+)
Type: CAZyme
Location: 13794 - 16124 (+)
Gene ID: HRGMv2_4320_134_13
Type: CAZyme
Location: 16126 - 18213 (+)
Type: CAZyme
Location: 16126 - 18213 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Petralouisia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.