Cluster: HRGMv2_4320_CGC3
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4320
- CGC Family ID: CGCFAM_10589
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4320_6 | HRGMv2_4320_6_4 | 3815 | 4948 | - | 8.A.5.1.3 |
| TC | HRGMv2_4320_6 | HRGMv2_4320_6_5 | 4974 | 6662 | - | 3.A.1.1.9 |
| TC | HRGMv2_4320_6 | HRGMv2_4320_6_6 | 6659 | 8383 | - | 8.A.59.2.1 |
| TF | HRGMv2_4320_6 | HRGMv2_4320_6_7 | 8337 | 9905 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_4320_6 | HRGMv2_4320_6_8 | 9996 | 11603 | - | GH13_36 |
| TC | HRGMv2_4320_6 | HRGMv2_4320_6_9 | 11682 | 12560 | - | 3.A.1.1.27 |
| TC | HRGMv2_4320_6 | HRGMv2_4320_6_10 | 12560 | 13936 | - | 3.A.1.1.27 |
| pfam | HRGMv2_4320_6 | HRGMv2_4320_6_11 | 14055 | 15317 | - | SBP_bac_8 |
| CAZyme | HRGMv2_4320_6 | HRGMv2_4320_6_12 | 15524 | 17266 | - | CBM34 | GH13_20 |
| pfam | HRGMv2_4320_6 | HRGMv2_4320_6_13 | 17569 | 18150 | - | Cytidylate_kin2 |
| TC | HRGMv2_4320_6 | HRGMv2_4320_6_14 | 18218 | 18910 | - | 2.A.122.1.6 |
| TC | HRGMv2_4320_6 | HRGMv2_4320_6_15 | 18903 | 19265 | - | 1.E.14.1.17 |
Gene ID: HRGMv2_4320_6_4
Type: TC
Location: 3815 - 4948 (-)
Type: TC
Location: 3815 - 4948 (-)
Gene ID: HRGMv2_4320_6_5
Type: TC
Location: 4974 - 6662 (-)
Type: TC
Location: 4974 - 6662 (-)
Gene ID: HRGMv2_4320_6_6
Type: TC
Location: 6659 - 8383 (-)
Type: TC
Location: 6659 - 8383 (-)
Gene ID: HRGMv2_4320_6_7
Type: TF
Location: 8337 - 9905 (-)
Type: TF
Location: 8337 - 9905 (-)
Gene ID: HRGMv2_4320_6_8
Type: CAZyme
Location: 9996 - 11603 (-)
Type: CAZyme
Location: 9996 - 11603 (-)
Gene ID: HRGMv2_4320_6_9
Type: TC
Location: 11682 - 12560 (-)
Type: TC
Location: 11682 - 12560 (-)
Gene ID: HRGMv2_4320_6_10
Type: TC
Location: 12560 - 13936 (-)
Type: TC
Location: 12560 - 13936 (-)
Gene ID: HRGMv2_4320_6_11
Type: pfam
Location: 14055 - 15317 (-)
Type: pfam
Location: 14055 - 15317 (-)
Gene ID: HRGMv2_4320_6_12
Type: CAZyme
Location: 15524 - 17266 (-)
Type: CAZyme
Location: 15524 - 17266 (-)
Gene ID: HRGMv2_4320_6_13
Type: pfam
Location: 17569 - 18150 (-)
Type: pfam
Location: 17569 - 18150 (-)
Gene ID: HRGMv2_4320_6_14
Type: TC
Location: 18218 - 18910 (-)
Type: TC
Location: 18218 - 18910 (-)
Gene ID: HRGMv2_4320_6_15
Type: TC
Location: 18903 - 19265 (-)
Type: TC
Location: 18903 - 19265 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Petralouisia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.