Cluster: HRGMv2_4320_CGC28
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4320
- CGC Family ID: CGCFAM_10587
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4320_101 | HRGMv2_4320_101_1 | 407 | 2923 | + | CBM26 | GH13_28 |
| pfam | HRGMv2_4320_101 | HRGMv2_4320_101_2 | 3252 | 4238 | + | HMGL-like |
| TF | HRGMv2_4320_101 | HRGMv2_4320_101_3 | 4442 | 5458 | + | LacI |
| CAZyme | HRGMv2_4320_101 | HRGMv2_4320_101_4 | 5465 | 7261 | + | CBM34 | GH13_20 |
| STP | HRGMv2_4320_101 | HRGMv2_4320_101_5 | 7263 | 8570 | + | SBP_bac_1 |
| TC | HRGMv2_4320_101 | HRGMv2_4320_101_6 | 8758 | 9639 | + | 3.A.1.1.34 |
| TC | HRGMv2_4320_101 | HRGMv2_4320_101_7 | 9650 | 10489 | + | 3.A.1.1.44 |
Gene ID: HRGMv2_4320_101_1
Type: CAZyme
Location: 407 - 2923 (+)
Type: CAZyme
Location: 407 - 2923 (+)
Gene ID: HRGMv2_4320_101_2
Type: pfam
Location: 3252 - 4238 (+)
Type: pfam
Location: 3252 - 4238 (+)
Gene ID: HRGMv2_4320_101_3
Type: TF
Location: 4442 - 5458 (+)
Type: TF
Location: 4442 - 5458 (+)
Gene ID: HRGMv2_4320_101_4
Type: CAZyme
Location: 5465 - 7261 (+)
Type: CAZyme
Location: 5465 - 7261 (+)
Gene ID: HRGMv2_4320_101_5
Type: STP
Location: 7263 - 8570 (+)
Type: STP
Location: 7263 - 8570 (+)
Gene ID: HRGMv2_4320_101_6
Type: TC
Location: 8758 - 9639 (+)
Type: TC
Location: 8758 - 9639 (+)
Gene ID: HRGMv2_4320_101_7
Type: TC
Location: 9650 - 10489 (+)
Type: TC
Location: 9650 - 10489 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Petralouisia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.