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Cluster: HRGMv2_4320_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4320_73 HRGMv2_4320_73_11 12575 13600 + 3.A.1.1.23
TC HRGMv2_4320_73 HRGMv2_4320_73_12 13602 14459 + 3.A.1.1.18
pfam HRGMv2_4320_73 HRGMv2_4320_73_13 14470 15648 + GlcNAc_2-epim
CAZyme HRGMv2_4320_73 HRGMv2_4320_73_14 15662 16837 + GH130_1
CAZyme HRGMv2_4320_73 HRGMv2_4320_73_15 16852 17874 + GH130_2
CAZyme HRGMv2_4320_73 HRGMv2_4320_73_16 18015 19016 + CE2
CAZyme HRGMv2_4320_73 HRGMv2_4320_73_17 19082 20197 + CBM35inCE17 | CE17
CAZyme HRGMv2_4320_73 HRGMv2_4320_73_18 20227 22530 + GH1
Gene ID: HRGMv2_4320_73_11
Type: TC
Location: 12575 - 13600 (+)
Gene ID: HRGMv2_4320_73_12
Type: TC
Location: 13602 - 14459 (+)
Gene ID: HRGMv2_4320_73_13
Type: pfam
Location: 14470 - 15648 (+)
Gene ID: HRGMv2_4320_73_14
Type: CAZyme
Location: 15662 - 16837 (+)
Gene ID: HRGMv2_4320_73_15
Type: CAZyme
Location: 16852 - 17874 (+)
Gene ID: HRGMv2_4320_73_16
Type: CAZyme
Location: 18015 - 19016 (+)
Gene ID: HRGMv2_4320_73_17
Type: CAZyme
Location: 19082 - 20197 (+)
Gene ID: HRGMv2_4320_73_18
Type: CAZyme
Location: 20227 - 22530 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Petralouisia
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4320_73_11 vegetarian > vegan 1.26089 0.00694
HRGMv2_4320_73_14 vegetarian > vegan 1.02595 0.00694
HRGMv2_4320_73_15 vegetarian > omnivore 1.00625 0.00290

🧭 Explore Read Mapping of CGC

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