Cluster: HRGMv2_4319_CGC5
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_4319
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4319_4 | HRGMv2_4319_4_22 | 29174 | 30466 | - | 2.A.1.21.22 |
| TC | HRGMv2_4319_4 | HRGMv2_4319_4_23 | 30625 | 32184 | - | 2.A.21.2.4 |
| STP | HRGMv2_4319_4 | HRGMv2_4319_4_24 | 32273 | 32764 | - | GyrI-like |
| pfam | HRGMv2_4319_4 | HRGMv2_4319_4_25 | 32772 | 33401 | - | YjbR |
| CAZyme | HRGMv2_4319_4 | HRGMv2_4319_4_26 | 33948 | 35957 | - | GH42 |
| CAZyme | HRGMv2_4319_4 | HRGMv2_4319_4_27 | 36010 | 38736 | - | GH2 |
| CAZyme | HRGMv2_4319_4 | HRGMv2_4319_4_28 | 38705 | 41296 | - | PL26 |
| STP | HRGMv2_4319_4 | HRGMv2_4319_4_29 | 41328 | 43097 | - | HATPase_c |
| STP | HRGMv2_4319_4 | HRGMv2_4319_4_30 | 43221 | 44873 | - | SBP_bac_1 |
| TC | HRGMv2_4319_4 | HRGMv2_4319_4_31 | 44939 | 45850 | - | 3.A.1.1.29 |
| TC | HRGMv2_4319_4 | HRGMv2_4319_4_32 | 45921 | 46859 | - | 3.A.1.1.29 |
| TF | HRGMv2_4319_4 | HRGMv2_4319_4_33 | 47118 | 48581 | + | HTH_AraC |
| CAZyme | HRGMv2_4319_4 | HRGMv2_4319_4_34 | 48596 | 50977 | + | GH2 |
Gene ID: HRGMv2_4319_4_22
Type: TC
Location: 29174 - 30466 (-)
Type: TC
Location: 29174 - 30466 (-)
Gene ID: HRGMv2_4319_4_23
Type: TC
Location: 30625 - 32184 (-)
Type: TC
Location: 30625 - 32184 (-)
Gene ID: HRGMv2_4319_4_24
Type: STP
Location: 32273 - 32764 (-)
Type: STP
Location: 32273 - 32764 (-)
Gene ID: HRGMv2_4319_4_25
Type: pfam
Location: 32772 - 33401 (-)
Type: pfam
Location: 32772 - 33401 (-)
Gene ID: HRGMv2_4319_4_26
Type: CAZyme
Location: 33948 - 35957 (-)
Type: CAZyme
Location: 33948 - 35957 (-)
Gene ID: HRGMv2_4319_4_27
Type: CAZyme
Location: 36010 - 38736 (-)
Type: CAZyme
Location: 36010 - 38736 (-)
Gene ID: HRGMv2_4319_4_28
Type: CAZyme
Location: 38705 - 41296 (-)
Type: CAZyme
Location: 38705 - 41296 (-)
Gene ID: HRGMv2_4319_4_29
Type: STP
Location: 41328 - 43097 (-)
Type: STP
Location: 41328 - 43097 (-)
Gene ID: HRGMv2_4319_4_30
Type: STP
Location: 43221 - 44873 (-)
Type: STP
Location: 43221 - 44873 (-)
Gene ID: HRGMv2_4319_4_31
Type: TC
Location: 44939 - 45850 (-)
Type: TC
Location: 44939 - 45850 (-)
Gene ID: HRGMv2_4319_4_32
Type: TC
Location: 45921 - 46859 (-)
Type: TC
Location: 45921 - 46859 (-)
Gene ID: HRGMv2_4319_4_33
Type: TF
Location: 47118 - 48581 (+)
Type: TF
Location: 47118 - 48581 (+)
Gene ID: HRGMv2_4319_4_34
Type: CAZyme
Location: 48596 - 50977 (+)
Type: CAZyme
Location: 48596 - 50977 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor stercoripullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.