Cluster: HRGMv2_4319_CGC40
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4319
- CGC Family ID: CGCFAM_00541
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4319_87 | HRGMv2_4319_87_1 | 3 | 2123 | - | GH2 |
| CAZyme | HRGMv2_4319_87 | HRGMv2_4319_87_2 | 2136 | 4022 | - | GH31_1 |
| CAZyme | HRGMv2_4319_87 | HRGMv2_4319_87_3 | 4034 | 7171 | - | GH38 |
| TC | HRGMv2_4319_87 | HRGMv2_4319_87_4 | 7196 | 8122 | - | 3.A.1.1.10 |
| TC | HRGMv2_4319_87 | HRGMv2_4319_87_5 | 8134 | 9042 | - | 3.A.1.1.10 |
| TF | HRGMv2_4319_87 | HRGMv2_4319_87_6 | 9070 | 11244 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_4319_87 | HRGMv2_4319_87_7 | 11324 | 13036 | - | 3.A.1.1.10 |
Gene ID: HRGMv2_4319_87_1
Type: CAZyme
Location: 3 - 2123 (-)
Type: CAZyme
Location: 3 - 2123 (-)
Gene ID: HRGMv2_4319_87_2
Type: CAZyme
Location: 2136 - 4022 (-)
Type: CAZyme
Location: 2136 - 4022 (-)
Gene ID: HRGMv2_4319_87_3
Type: CAZyme
Location: 4034 - 7171 (-)
Type: CAZyme
Location: 4034 - 7171 (-)
Gene ID: HRGMv2_4319_87_4
Type: TC
Location: 7196 - 8122 (-)
Type: TC
Location: 7196 - 8122 (-)
Gene ID: HRGMv2_4319_87_5
Type: TC
Location: 8134 - 9042 (-)
Type: TC
Location: 8134 - 9042 (-)
Gene ID: HRGMv2_4319_87_6
Type: TF
Location: 9070 - 11244 (-)
Type: TF
Location: 9070 - 11244 (-)
Gene ID: HRGMv2_4319_87_7
Type: TC
Location: 11324 - 13036 (-)
Type: TC
Location: 11324 - 13036 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor stercoripullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.