Cluster: HRGMv2_4319_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4319
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4319_4 | HRGMv2_4319_4_6 | 6423 | 6635 | - | 1.E.52.1.2 |
| pfam | HRGMv2_4319_4 | HRGMv2_4319_4_7 | 6694 | 7563 | - | T2SSF |
| NULL(UNKNOWN) | HRGMv2_4319_4 | HRGMv2_4319_4_8 | 7573 | 8445 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4319_4 | HRGMv2_4319_4_9 | 8456 | 9694 | - | 3.A.7.15.1 |
| pfam | HRGMv2_4319_4 | HRGMv2_4319_4_10 | 9713 | 10774 | - | TadZ-like_ARD |
| pfam | HRGMv2_4319_4 | HRGMv2_4319_4_11 | 11056 | 12834 | - | ILVD_EDD_N | ILV_EDD_C |
| CAZyme | HRGMv2_4319_4 | HRGMv2_4319_4_12 | 12831 | 15740 | - | CBM67 | GH78 |
| CAZyme | HRGMv2_4319_4 | HRGMv2_4319_4_13 | 15743 | 17824 | - | CBM66 |
| CAZyme | HRGMv2_4319_4 | HRGMv2_4319_4_14 | 17841 | 21086 | - | GH106 |
| TF | HRGMv2_4319_4 | HRGMv2_4319_4_15 | 21178 | 22635 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_4319_4 | HRGMv2_4319_4_16 | 22666 | 24444 | - | 8.A.59.2.1 |
| TC | HRGMv2_4319_4 | HRGMv2_4319_4_17 | 24514 | 25350 | - | 3.A.1.1.45 |
| TC | HRGMv2_4319_4 | HRGMv2_4319_4_18 | 25347 | 26213 | - | 3.A.1.1.7 |
Gene ID: HRGMv2_4319_4_6
Type: TC
Location: 6423 - 6635 (-)
Type: TC
Location: 6423 - 6635 (-)
Gene ID: HRGMv2_4319_4_7
Type: pfam
Location: 6694 - 7563 (-)
Type: pfam
Location: 6694 - 7563 (-)
Gene ID: HRGMv2_4319_4_8
Type:
Location: 7573 - 8445 (-)
Type:
Location: 7573 - 8445 (-)
Gene ID: HRGMv2_4319_4_9
Type: TC
Location: 8456 - 9694 (-)
Type: TC
Location: 8456 - 9694 (-)
Gene ID: HRGMv2_4319_4_10
Type: pfam
Location: 9713 - 10774 (-)
Type: pfam
Location: 9713 - 10774 (-)
Gene ID: HRGMv2_4319_4_11
Type: pfam
Location: 11056 - 12834 (-)
Type: pfam
Location: 11056 - 12834 (-)
Gene ID: HRGMv2_4319_4_12
Type: CAZyme
Location: 12831 - 15740 (-)
Type: CAZyme
Location: 12831 - 15740 (-)
Gene ID: HRGMv2_4319_4_13
Type: CAZyme
Location: 15743 - 17824 (-)
Type: CAZyme
Location: 15743 - 17824 (-)
Gene ID: HRGMv2_4319_4_14
Type: CAZyme
Location: 17841 - 21086 (-)
Type: CAZyme
Location: 17841 - 21086 (-)
Gene ID: HRGMv2_4319_4_15
Type: TF
Location: 21178 - 22635 (-)
Type: TF
Location: 21178 - 22635 (-)
Gene ID: HRGMv2_4319_4_16
Type: TC
Location: 22666 - 24444 (-)
Type: TC
Location: 22666 - 24444 (-)
Gene ID: HRGMv2_4319_4_17
Type: TC
Location: 24514 - 25350 (-)
Type: TC
Location: 24514 - 25350 (-)
Gene ID: HRGMv2_4319_4_18
Type: TC
Location: 25347 - 26213 (-)
Type: TC
Location: 25347 - 26213 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor stercoripullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.