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Cluster: HRGMv2_4319_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4319_80 HRGMv2_4319_80_2 616 1383 + 3.A.1.3.20
TC HRGMv2_4319_80 HRGMv2_4319_80_3 1396 2136 + 3.A.1.3.20
TC HRGMv2_4319_80 HRGMv2_4319_80_4 2149 2787 + 2.A.115.2.14
pfam HRGMv2_4319_80 HRGMv2_4319_80_5 2794 4008 + Aminotran_3
pfam HRGMv2_4319_80 HRGMv2_4319_80_6 4024 5169 + Fe-ADH | Fe-ADH_2 | ADH_Fe_C
CAZyme HRGMv2_4319_80 HRGMv2_4319_80_7 5282 7219 + CE20 | CE20
CAZyme HRGMv2_4319_80 HRGMv2_4319_80_8 7221 10148 + GH115
NULL(UNKNOWN) HRGMv2_4319_80 HRGMv2_4319_80_9 10214 10873 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4319_80 HRGMv2_4319_80_10 10908 11990 + 9.B.33.1.1
Gene ID: HRGMv2_4319_80_2
Type: TC
Location: 616 - 1383 (+)
Gene ID: HRGMv2_4319_80_3
Type: TC
Location: 1396 - 2136 (+)
Gene ID: HRGMv2_4319_80_4
Type: TC
Location: 2149 - 2787 (+)
Gene ID: HRGMv2_4319_80_5
Type: pfam
Location: 2794 - 4008 (+)
Gene ID: HRGMv2_4319_80_6
Type: pfam
Location: 4024 - 5169 (+)
Gene ID: HRGMv2_4319_80_7
Type: CAZyme
Location: 5282 - 7219 (+)
Gene ID: HRGMv2_4319_80_8
Type: CAZyme
Location: 7221 - 10148 (+)
Gene ID: HRGMv2_4319_80_9
Type:
Location: 10214 - 10873 (+)
Gene ID: HRGMv2_4319_80_10
Type: TC
Location: 10908 - 11990 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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