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Cluster: HRGMv2_4319_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4319_3 HRGMv2_4319_3_24 25060 25980 + 3.A.1.1.9
TC HRGMv2_4319_3 HRGMv2_4319_3_25 26037 26915 + 3.A.1.1.29
STP HRGMv2_4319_3 HRGMv2_4319_3_26 26990 28522 + SBP_bac_1
pfam HRGMv2_4319_3 HRGMv2_4319_3_27 28575 30614 + Ldi
TC HRGMv2_4319_3 HRGMv2_4319_3_28 30615 31235 + 5.A.1.6.1
NULL(UNKNOWN) HRGMv2_4319_3 HRGMv2_4319_3_29 31258 31386 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4319_3 HRGMv2_4319_3_30 31364 33511 + 3.A.3.5.34
STP HRGMv2_4319_3 HRGMv2_4319_3_31 33511 35256 + HATPase_c
TF HRGMv2_4319_3 HRGMv2_4319_3_32 35234 36880 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_4319_3 HRGMv2_4319_3_33 36882 38597 + GH3
pfam HRGMv2_4319_3 HRGMv2_4319_3_34 38988 39863 + PRD | PRD | CAT_RBD
TC HRGMv2_4319_3 HRGMv2_4319_3_35 39850 40332 + 4.A.1.2.2
TC HRGMv2_4319_3 HRGMv2_4319_3_36 40367 41980 + 8.A.7.1.1
STP HRGMv2_4319_3 HRGMv2_4319_3_37 42033 42290 + PTS-HPr
TC HRGMv2_4319_3 HRGMv2_4319_3_38 42392 43864 + 4.A.1.1.7
TC HRGMv2_4319_3 HRGMv2_4319_3_39 44231 45844 + 8.A.7.1.1
Gene ID: HRGMv2_4319_3_24
Type: TC
Location: 25060 - 25980 (+)
Gene ID: HRGMv2_4319_3_25
Type: TC
Location: 26037 - 26915 (+)
Gene ID: HRGMv2_4319_3_26
Type: STP
Location: 26990 - 28522 (+)
Gene ID: HRGMv2_4319_3_27
Type: pfam
Location: 28575 - 30614 (+)
Gene ID: HRGMv2_4319_3_28
Type: TC
Location: 30615 - 31235 (+)
Gene ID: HRGMv2_4319_3_29
Type:
Location: 31258 - 31386 (+)
Gene ID: HRGMv2_4319_3_30
Type: TC
Location: 31364 - 33511 (+)
Gene ID: HRGMv2_4319_3_31
Type: STP
Location: 33511 - 35256 (+)
Gene ID: HRGMv2_4319_3_32
Type: TF
Location: 35234 - 36880 (+)
Gene ID: HRGMv2_4319_3_33
Type: CAZyme
Location: 36882 - 38597 (+)
Gene ID: HRGMv2_4319_3_34
Type: pfam
Location: 38988 - 39863 (+)
Gene ID: HRGMv2_4319_3_35
Type: TC
Location: 39850 - 40332 (+)
Gene ID: HRGMv2_4319_3_36
Type: TC
Location: 40367 - 41980 (+)
Gene ID: HRGMv2_4319_3_37
Type: STP
Location: 42033 - 42290 (+)
Gene ID: HRGMv2_4319_3_38
Type: TC
Location: 42392 - 43864 (+)
Gene ID: HRGMv2_4319_3_39
Type: TC
Location: 44231 - 45844 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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