Cluster: HRGMv2_4319_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4319
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4319_44 | HRGMv2_4319_44_1 | 265 | 3066 | - | GT51 |
| pfam | HRGMv2_4319_44 | HRGMv2_4319_44_2 | 3166 | 3807 | + | UPF0029 | DUF1949 |
| TC | HRGMv2_4319_44 | HRGMv2_4319_44_3 | 3942 | 5291 | + | 1.A.26.1.2 |
| TC | HRGMv2_4319_44 | HRGMv2_4319_44_4 | 5340 | 6713 | + | 2.A.66.1.32 |
| TC | HRGMv2_4319_44 | HRGMv2_4319_44_5 | 6718 | 8508 | - | 3.A.1.106.3 |
| TC | HRGMv2_4319_44 | HRGMv2_4319_44_6 | 8511 | 10289 | - | 3.A.1.106.3 |
Gene ID: HRGMv2_4319_44_1
Type: CAZyme
Location: 265 - 3066 (-)
Type: CAZyme
Location: 265 - 3066 (-)
Gene ID: HRGMv2_4319_44_2
Type: pfam
Location: 3166 - 3807 (+)
Type: pfam
Location: 3166 - 3807 (+)
Gene ID: HRGMv2_4319_44_3
Type: TC
Location: 3942 - 5291 (+)
Type: TC
Location: 3942 - 5291 (+)
Gene ID: HRGMv2_4319_44_4
Type: TC
Location: 5340 - 6713 (+)
Type: TC
Location: 5340 - 6713 (+)
Gene ID: HRGMv2_4319_44_5
Type: TC
Location: 6718 - 8508 (-)
Type: TC
Location: 6718 - 8508 (-)
Gene ID: HRGMv2_4319_44_6
Type: TC
Location: 8511 - 10289 (-)
Type: TC
Location: 8511 - 10289 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor stercoripullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4319_44_3 | vegetarian > omnivore | 1.14394 | 0.02254 |
| HRGMv2_4319_44_3 | vegetarian > vegan | 1.30662 | 0.01846 |