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Cluster: HRGMv2_4319_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4319_40 HRGMv2_4319_40_2 415 966 + 8.A.5.1.6
pfam HRGMv2_4319_40 HRGMv2_4319_40_3 963 1253 + Aldo_ket_red
STP HRGMv2_4319_40 HRGMv2_4319_40_4 1426 2532 + Peripla_BP_1
TC HRGMv2_4319_40 HRGMv2_4319_40_5 2558 4093 + 3.A.1.2.3
TC HRGMv2_4319_40 HRGMv2_4319_40_6 4099 5097 + 3.A.1.2.3
CAZyme HRGMv2_4319_40 HRGMv2_4319_40_7 5120 5971 + CE1
pfam HRGMv2_4319_40 HRGMv2_4319_40_8 6015 7223 + MFS_1 | MFS_1 | MFS_1_like
TF HRGMv2_4319_40 HRGMv2_4319_40_9 7218 8474 - HTH_AraC | HTH_AraC
TC HRGMv2_4319_40 HRGMv2_4319_40_10 8491 10026 - 8.A.59.2.1
Gene ID: HRGMv2_4319_40_2
Type: TC
Location: 415 - 966 (+)
Gene ID: HRGMv2_4319_40_3
Type: pfam
Location: 963 - 1253 (+)
Gene ID: HRGMv2_4319_40_4
Type: STP
Location: 1426 - 2532 (+)
Gene ID: HRGMv2_4319_40_5
Type: TC
Location: 2558 - 4093 (+)
Gene ID: HRGMv2_4319_40_6
Type: TC
Location: 4099 - 5097 (+)
Gene ID: HRGMv2_4319_40_7
Type: CAZyme
Location: 5120 - 5971 (+)
Gene ID: HRGMv2_4319_40_8
Type: pfam
Location: 6015 - 7223 (+)
Gene ID: HRGMv2_4319_40_9
Type: TF
Location: 7218 - 8474 (-)
Gene ID: HRGMv2_4319_40_10
Type: TC
Location: 8491 - 10026 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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