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Cluster: HRGMv2_4319_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4319_23 HRGMv2_4319_23_14 10805 11824 - 9.A.11.1.1
pfam HRGMv2_4319_23 HRGMv2_4319_23_15 11937 13001 - SH3_3
pfam HRGMv2_4319_23 HRGMv2_4319_23_16 13063 14148 - tRNA-synt_1b
CAZyme HRGMv2_4319_23 HRGMv2_4319_23_17 14318 16687 + GH2
TC HRGMv2_4319_23 HRGMv2_4319_23_18 16698 19376 - 3.A.3.2.21
TC HRGMv2_4319_23 HRGMv2_4319_23_19 19466 21391 - 3.A.1.135.5
TC HRGMv2_4319_23 HRGMv2_4319_23_20 21388 23142 - 3.A.1.135.5
pfam HRGMv2_4319_23 HRGMv2_4319_23_21 23245 23703 - SpoVAC_SpoVAEB
TC HRGMv2_4319_23 HRGMv2_4319_23_22 23851 25695 - 1.B.52.2.2
Gene ID: HRGMv2_4319_23_14
Type: TC
Location: 10805 - 11824 (-)
Gene ID: HRGMv2_4319_23_15
Type: pfam
Location: 11937 - 13001 (-)
Gene ID: HRGMv2_4319_23_16
Type: pfam
Location: 13063 - 14148 (-)
Gene ID: HRGMv2_4319_23_17
Type: CAZyme
Location: 14318 - 16687 (+)
Gene ID: HRGMv2_4319_23_18
Type: TC
Location: 16698 - 19376 (-)
Gene ID: HRGMv2_4319_23_19
Type: TC
Location: 19466 - 21391 (-)
Gene ID: HRGMv2_4319_23_20
Type: TC
Location: 21388 - 23142 (-)
Gene ID: HRGMv2_4319_23_21
Type: pfam
Location: 23245 - 23703 (-)
Gene ID: HRGMv2_4319_23_22
Type: TC
Location: 23851 - 25695 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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