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Cluster: HRGMv2_4319_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4319_10 HRGMv2_4319_10_17 15273 17294 - GH42
pfam HRGMv2_4319_10 HRGMv2_4319_10_18 17291 18292 - FAD_oxidored
pfam HRGMv2_4319_10 HRGMv2_4319_10_19 18304 19857 - FAD_binding_2 | FAD_oxidored
TC HRGMv2_4319_10 HRGMv2_4319_10_20 19916 20752 - 3.A.1.1.11
TC HRGMv2_4319_10 HRGMv2_4319_10_21 20797 21675 - 3.A.1.1.11
STP HRGMv2_4319_10 HRGMv2_4319_10_22 21701 23113 - SBP_bac_1
TF HRGMv2_4319_10 HRGMv2_4319_10_23 23282 24037 + HTH_AraC | HTH_AraC
TC HRGMv2_4319_10 HRGMv2_4319_10_24 24024 25811 + 8.A.59.2.1
TC HRGMv2_4319_10 HRGMv2_4319_10_25 25828 27729 - 3.A.3.6.10
Gene ID: HRGMv2_4319_10_17
Type: CAZyme
Location: 15273 - 17294 (-)
Gene ID: HRGMv2_4319_10_18
Type: pfam
Location: 17291 - 18292 (-)
Gene ID: HRGMv2_4319_10_19
Type: pfam
Location: 18304 - 19857 (-)
Gene ID: HRGMv2_4319_10_20
Type: TC
Location: 19916 - 20752 (-)
Gene ID: HRGMv2_4319_10_21
Type: TC
Location: 20797 - 21675 (-)
Gene ID: HRGMv2_4319_10_22
Type: STP
Location: 21701 - 23113 (-)
Gene ID: HRGMv2_4319_10_23
Type: TF
Location: 23282 - 24037 (+)
Gene ID: HRGMv2_4319_10_24
Type: TC
Location: 24024 - 25811 (+)
Gene ID: HRGMv2_4319_10_25
Type: TC
Location: 25828 - 27729 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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