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Cluster: HRGMv2_4315_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4315_1 HRGMv2_4315_1_151 180982 183648 - GH98
pfam HRGMv2_4315_1 HRGMv2_4315_1_152 184079 185338 + DUF4317
CAZyme HRGMv2_4315_1 HRGMv2_4315_1_153 185419 188481 - GH2
STP HRGMv2_4315_1 HRGMv2_4315_1_154 188683 190254 - SBP_bac_1
TC HRGMv2_4315_1 HRGMv2_4315_1_155 190313 191242 - 3.A.1.1.29
TC HRGMv2_4315_1 HRGMv2_4315_1_156 191261 192163 - 3.A.1.1.29
TF HRGMv2_4315_1 HRGMv2_4315_1_157 192447 193529 + HTH_AraC | HTH_AraC
TC HRGMv2_4315_1 HRGMv2_4315_1_158 193526 195346 + 9.B.33.1.2
CAZyme HRGMv2_4315_1 HRGMv2_4315_1_159 195428 196780 + GH29
CAZyme HRGMv2_4315_1 HRGMv2_4315_1_160 196896 199274 - CBM32 | GH136
Gene ID: HRGMv2_4315_1_151
Type: CAZyme
Location: 180982 - 183648 (-)
Gene ID: HRGMv2_4315_1_152
Type: pfam
Location: 184079 - 185338 (+)
Gene ID: HRGMv2_4315_1_153
Type: CAZyme
Location: 185419 - 188481 (-)
Gene ID: HRGMv2_4315_1_154
Type: STP
Location: 188683 - 190254 (-)
Gene ID: HRGMv2_4315_1_155
Type: TC
Location: 190313 - 191242 (-)
Gene ID: HRGMv2_4315_1_156
Type: TC
Location: 191261 - 192163 (-)
Gene ID: HRGMv2_4315_1_157
Type: TF
Location: 192447 - 193529 (+)
Gene ID: HRGMv2_4315_1_158
Type: TC
Location: 193526 - 195346 (+)
Gene ID: HRGMv2_4315_1_159
Type: CAZyme
Location: 195428 - 196780 (+)
Gene ID: HRGMv2_4315_1_160
Type: CAZyme
Location: 196896 - 199274 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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