Cluster: HRGMv2_4315_CGC36
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4315
- CGC Family ID: CGCFAM_00896
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4315_26 | HRGMv2_4315_26_12 | 14987 | 15874 | + | 3.A.1.1.37 |
| TC | HRGMv2_4315_26 | HRGMv2_4315_26_13 | 15885 | 16718 | + | 3.A.1.1.47 |
| CAZyme | HRGMv2_4315_26 | HRGMv2_4315_26_14 | 16740 | 19088 | + | GH65 |
| pfam | HRGMv2_4315_26 | HRGMv2_4315_26_15 | 19103 | 19747 | + | Hydrolase | Hydrolase_like | HAD_2 |
| TC | HRGMv2_4315_26 | HRGMv2_4315_26_16 | 19821 | 21182 | - | 2.A.66.1.33 |
Gene ID: HRGMv2_4315_26_12
Type: TC
Location: 14987 - 15874 (+)
Type: TC
Location: 14987 - 15874 (+)
Gene ID: HRGMv2_4315_26_13
Type: TC
Location: 15885 - 16718 (+)
Type: TC
Location: 15885 - 16718 (+)
Gene ID: HRGMv2_4315_26_14
Type: CAZyme
Location: 16740 - 19088 (+)
Type: CAZyme
Location: 16740 - 19088 (+)
Gene ID: HRGMv2_4315_26_15
Type: pfam
Location: 19103 - 19747 (+)
Type: pfam
Location: 19103 - 19747 (+)
Gene ID: HRGMv2_4315_26_16
Type: TC
Location: 19821 - 21182 (-)
Type: TC
Location: 19821 - 21182 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp019421345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.