Cluster: HRGMv2_4315_CGC30
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4315
- CGC Family ID: CGCFAM_08460
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4315_13 | HRGMv2_4315_13_66 | 77636 | 78424 | + | CE4 |
| CAZyme | HRGMv2_4315_13 | HRGMv2_4315_13_67 | 78421 | 79752 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_4315_13 | HRGMv2_4315_13_68 | 79847 | 81577 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4315_13 | HRGMv2_4315_13_69 | 81662 | 82363 | - | Peptidase_M54 |
| TC | HRGMv2_4315_13 | HRGMv2_4315_13_70 | 82884 | 84536 | + | 1.B.52.2.2 |
Gene ID: HRGMv2_4315_13_66
Type: CAZyme
Location: 77636 - 78424 (+)
Type: CAZyme
Location: 77636 - 78424 (+)
Gene ID: HRGMv2_4315_13_67
Type: CAZyme
Location: 78421 - 79752 (-)
Type: CAZyme
Location: 78421 - 79752 (-)
Gene ID: HRGMv2_4315_13_68
Type:
Location: 79847 - 81577 (-)
Type:
Location: 79847 - 81577 (-)
Gene ID: HRGMv2_4315_13_69
Type: pfam
Location: 81662 - 82363 (-)
Type: pfam
Location: 81662 - 82363 (-)
Gene ID: HRGMv2_4315_13_70
Type: TC
Location: 82884 - 84536 (+)
Type: TC
Location: 82884 - 84536 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp019421345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4315_13_66 | vegetarian > vegan | 1.11290 | 0.00291 |