Cluster: HRGMv2_4315_CGC29
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4315
- CGC Family ID: CGCFAM_00246
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4315_12 | HRGMv2_4315_12_65 | 78442 | 80310 | - | GH20 |
| CAZyme | HRGMv2_4315_12 | HRGMv2_4315_12_66 | 80327 | 83416 | - | GH38 |
| CAZyme | HRGMv2_4315_12 | HRGMv2_4315_12_67 | 83438 | 84427 | - | GH130_2 |
| pfam | HRGMv2_4315_12 | HRGMv2_4315_12_68 | 84504 | 85982 | - | DUF3502 | SBP_bac_8 |
| TC | HRGMv2_4315_12 | HRGMv2_4315_12_69 | 86019 | 86945 | - | 3.A.1.1.29 |
| TC | HRGMv2_4315_12 | HRGMv2_4315_12_70 | 86955 | 87908 | - | 3.A.1.1.29 |
Gene ID: HRGMv2_4315_12_65
Type: CAZyme
Location: 78442 - 80310 (-)
Type: CAZyme
Location: 78442 - 80310 (-)
Gene ID: HRGMv2_4315_12_66
Type: CAZyme
Location: 80327 - 83416 (-)
Type: CAZyme
Location: 80327 - 83416 (-)
Gene ID: HRGMv2_4315_12_67
Type: CAZyme
Location: 83438 - 84427 (-)
Type: CAZyme
Location: 83438 - 84427 (-)
Gene ID: HRGMv2_4315_12_68
Type: pfam
Location: 84504 - 85982 (-)
Type: pfam
Location: 84504 - 85982 (-)
Gene ID: HRGMv2_4315_12_69
Type: TC
Location: 86019 - 86945 (-)
Type: TC
Location: 86019 - 86945 (-)
Gene ID: HRGMv2_4315_12_70
Type: TC
Location: 86955 - 87908 (-)
Type: TC
Location: 86955 - 87908 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp019421345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.