Cluster: HRGMv2_4315_CGC21
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4315
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4315_7 | HRGMv2_4315_7_42 | 52280 | 53059 | + | 3.A.1.17.1 |
| TC | HRGMv2_4315_7 | HRGMv2_4315_7_43 | 53035 | 53826 | + | 3.A.1.16.3 |
| STP | HRGMv2_4315_7 | HRGMv2_4315_7_44 | 53885 | 54985 | + | SBP_bac_3 |
| NULL(UNKNOWN) | HRGMv2_4315_7 | HRGMv2_4315_7_45 | 55085 | 55906 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4315_7 | HRGMv2_4315_7_46 | 55923 | 57074 | + | CE9 |
Gene ID: HRGMv2_4315_7_42
Type: TC
Location: 52280 - 53059 (+)
Type: TC
Location: 52280 - 53059 (+)
Gene ID: HRGMv2_4315_7_43
Type: TC
Location: 53035 - 53826 (+)
Type: TC
Location: 53035 - 53826 (+)
Gene ID: HRGMv2_4315_7_44
Type: STP
Location: 53885 - 54985 (+)
Type: STP
Location: 53885 - 54985 (+)
Gene ID: HRGMv2_4315_7_45
Type:
Location: 55085 - 55906 (+)
Type:
Location: 55085 - 55906 (+)
Gene ID: HRGMv2_4315_7_46
Type: CAZyme
Location: 55923 - 57074 (+)
Type: CAZyme
Location: 55923 - 57074 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp019421345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.