Cluster: HRGMv2_4315_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4315
- CGC Family ID: CGCFAM_01671
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4315_1 | HRGMv2_4315_1_283 | 334268 | 336199 | - | GH20 |
| CAZyme | HRGMv2_4315_1 | HRGMv2_4315_1_284 | 336218 | 338254 | - | GH136 |
| TF | HRGMv2_4315_1 | HRGMv2_4315_1_285 | 338307 | 339833 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_4315_1 | HRGMv2_4315_1_286 | 339826 | 341637 | - | 8.A.59.2.1 |
| TC | HRGMv2_4315_1 | HRGMv2_4315_1_287 | 341765 | 342586 | - | 3.A.1.1.45 |
| TC | HRGMv2_4315_1 | HRGMv2_4315_1_288 | 342586 | 343467 | - | 3.A.1.1.20 |
Gene ID: HRGMv2_4315_1_283
Type: CAZyme
Location: 334268 - 336199 (-)
Type: CAZyme
Location: 334268 - 336199 (-)
Gene ID: HRGMv2_4315_1_284
Type: CAZyme
Location: 336218 - 338254 (-)
Type: CAZyme
Location: 336218 - 338254 (-)
Gene ID: HRGMv2_4315_1_285
Type: TF
Location: 338307 - 339833 (-)
Type: TF
Location: 338307 - 339833 (-)
Gene ID: HRGMv2_4315_1_286
Type: TC
Location: 339826 - 341637 (-)
Type: TC
Location: 339826 - 341637 (-)
Gene ID: HRGMv2_4315_1_287
Type: TC
Location: 341765 - 342586 (-)
Type: TC
Location: 341765 - 342586 (-)
Gene ID: HRGMv2_4315_1_288
Type: TC
Location: 342586 - 343467 (-)
Type: TC
Location: 342586 - 343467 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp019421345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.