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Cluster: HRGMv2_4314_CGC61

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4314_52 HRGMv2_4314_52_2 1562 3958 + GH94
pfam HRGMv2_4314_52 HRGMv2_4314_52_3 4021 5466 + PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
TC HRGMv2_4314_52 HRGMv2_4314_52_4 5640 7412 + 8.A.59.2.1
STP HRGMv2_4314_52 HRGMv2_4314_52_5 7557 8921 + SBP_bac_1
TC HRGMv2_4314_52 HRGMv2_4314_52_6 8988 9875 + 3.A.1.1.21
TC HRGMv2_4314_52 HRGMv2_4314_52_7 9891 10760 + 3.A.1.1.45
TF HRGMv2_4314_52 HRGMv2_4314_52_8 10774 11577 + HTH_AraC | HTH_AraC
NULL(UNKNOWN) HRGMv2_4314_52 HRGMv2_4314_52_9 11543 11740 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4314_52 HRGMv2_4314_52_10 11696 12853 - CE9
Gene ID: HRGMv2_4314_52_2
Type: CAZyme
Location: 1562 - 3958 (+)
Gene ID: HRGMv2_4314_52_3
Type: pfam
Location: 4021 - 5466 (+)
Gene ID: HRGMv2_4314_52_4
Type: TC
Location: 5640 - 7412 (+)
Gene ID: HRGMv2_4314_52_5
Type: STP
Location: 7557 - 8921 (+)
Gene ID: HRGMv2_4314_52_6
Type: TC
Location: 8988 - 9875 (+)
Gene ID: HRGMv2_4314_52_7
Type: TC
Location: 9891 - 10760 (+)
Gene ID: HRGMv2_4314_52_8
Type: TF
Location: 10774 - 11577 (+)
Gene ID: HRGMv2_4314_52_9
Type:
Location: 11543 - 11740 (+)
Gene ID: HRGMv2_4314_52_10
Type: CAZyme
Location: 11696 - 12853 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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