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Cluster: HRGMv2_4314_CGC54

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4314_41 HRGMv2_4314_41_11 7947 8711 + 3.A.1.9.1
TC HRGMv2_4314_41 HRGMv2_4314_41_12 8713 9537 + 3.A.1.9.1
pfam HRGMv2_4314_41 HRGMv2_4314_41_13 9544 10350 + BPD_transp_1
pfam HRGMv2_4314_41 HRGMv2_4314_41_14 10597 12111 - Metallophos | 5_nucleotid_C
CAZyme HRGMv2_4314_41 HRGMv2_4314_41_15 12469 15318 + GH3
pfam HRGMv2_4314_41 HRGMv2_4314_41_16 15525 16409 + DpaA_N
pfam HRGMv2_4314_41 HRGMv2_4314_41_17 16406 16993 + Flavoprotein
TC HRGMv2_4314_41 HRGMv2_4314_41_18 17206 18987 - 3.A.1.135.5
TC HRGMv2_4314_41 HRGMv2_4314_41_19 18987 20792 - 3.A.1.135.5
Gene ID: HRGMv2_4314_41_11
Type: TC
Location: 7947 - 8711 (+)
Gene ID: HRGMv2_4314_41_12
Type: TC
Location: 8713 - 9537 (+)
Gene ID: HRGMv2_4314_41_13
Type: pfam
Location: 9544 - 10350 (+)
Gene ID: HRGMv2_4314_41_14
Type: pfam
Location: 10597 - 12111 (-)
Gene ID: HRGMv2_4314_41_15
Type: CAZyme
Location: 12469 - 15318 (+)
Gene ID: HRGMv2_4314_41_16
Type: pfam
Location: 15525 - 16409 (+)
Gene ID: HRGMv2_4314_41_17
Type: pfam
Location: 16406 - 16993 (+)
Gene ID: HRGMv2_4314_41_18
Type: TC
Location: 17206 - 18987 (-)
Gene ID: HRGMv2_4314_41_19
Type: TC
Location: 18987 - 20792 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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