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Cluster: HRGMv2_4314_CGC45

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4314_26 HRGMv2_4314_26_20 34449 35429 + 3.A.1.34.1
TC HRGMv2_4314_26 HRGMv2_4314_26_21 35591 36541 + 3.A.1.34.1
TC HRGMv2_4314_26 HRGMv2_4314_26_22 36576 37370 + 3.A.1.34.1
TC HRGMv2_4314_26 HRGMv2_4314_26_23 37533 39086 - 2.A.35.2.1
pfam HRGMv2_4314_26 HRGMv2_4314_26_24 39279 40283 - DUF4349
TF HRGMv2_4314_26 HRGMv2_4314_26_25 40380 40847 - MarR
CAZyme HRGMv2_4314_26 HRGMv2_4314_26_26 41201 42484 - GH18
TC HRGMv2_4314_26 HRGMv2_4314_26_27 42636 44069 - 9.A.11.1.1
CAZyme HRGMv2_4314_26 HRGMv2_4314_26_28 44328 46061 - CBM34 | GH13_20
pfam HRGMv2_4314_26 HRGMv2_4314_26_29 46396 47400 + Asparaginase | Asparaginase_C
pfam HRGMv2_4314_26 HRGMv2_4314_26_30 47580 48590 + AsnA
TC HRGMv2_4314_26 HRGMv2_4314_26_31 48686 49252 - 2.A.107.1.2
Gene ID: HRGMv2_4314_26_20
Type: TC
Location: 34449 - 35429 (+)
Gene ID: HRGMv2_4314_26_21
Type: TC
Location: 35591 - 36541 (+)
Gene ID: HRGMv2_4314_26_22
Type: TC
Location: 36576 - 37370 (+)
Gene ID: HRGMv2_4314_26_23
Type: TC
Location: 37533 - 39086 (-)
Gene ID: HRGMv2_4314_26_24
Type: pfam
Location: 39279 - 40283 (-)
Gene ID: HRGMv2_4314_26_25
Type: TF
Location: 40380 - 40847 (-)
Gene ID: HRGMv2_4314_26_26
Type: CAZyme
Location: 41201 - 42484 (-)
Gene ID: HRGMv2_4314_26_27
Type: TC
Location: 42636 - 44069 (-)
Gene ID: HRGMv2_4314_26_28
Type: CAZyme
Location: 44328 - 46061 (-)
Gene ID: HRGMv2_4314_26_29
Type: pfam
Location: 46396 - 47400 (+)
Gene ID: HRGMv2_4314_26_30
Type: pfam
Location: 47580 - 48590 (+)
Gene ID: HRGMv2_4314_26_31
Type: TC
Location: 48686 - 49252 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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