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Cluster: HRGMv2_4314_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4314_5 HRGMv2_4314_5_107 129549 130889 + 2.A.66.1.33
TF HRGMv2_4314_5 HRGMv2_4314_5_108 131119 131868 + HTH_DeoR
STP HRGMv2_4314_5 HRGMv2_4314_5_109 131865 132767 + PfkB
TC HRGMv2_4314_5 HRGMv2_4314_5_110 132858 134750 + 4.A.2.1.4
STP HRGMv2_4314_5 HRGMv2_4314_5_111 134852 135115 + PTS-HPr
TC HRGMv2_4314_5 HRGMv2_4314_5_112 135162 136862 + 8.A.7.1.1
CAZyme HRGMv2_4314_5 HRGMv2_4314_5_113 137008 138849 - PL33_1
TF HRGMv2_4314_5 HRGMv2_4314_5_114 138852 140483 - HTH_AraC | HTH_AraC
TC HRGMv2_4314_5 HRGMv2_4314_5_115 140517 142322 - 8.A.59.2.1
STP HRGMv2_4314_5 HRGMv2_4314_5_116 142625 143968 + SBP_bac_1
TC HRGMv2_4314_5 HRGMv2_4314_5_117 144165 145367 + 3.A.1.1.20
TC HRGMv2_4314_5 HRGMv2_4314_5_118 145395 146231 + 3.A.1.1.11
CAZyme HRGMv2_4314_5 HRGMv2_4314_5_119 146470 147639 + GH88
TC HRGMv2_4314_5 HRGMv2_4314_5_120 147656 149698 + 1.B.52.2.1
pfam HRGMv2_4314_5 HRGMv2_4314_5_121 149752 150072 + rhaM
TC HRGMv2_4314_5 HRGMv2_4314_5_122 150210 151652 + 1.B.52.2.1
Gene ID: HRGMv2_4314_5_107
Type: TC
Location: 129549 - 130889 (+)
Gene ID: HRGMv2_4314_5_108
Type: TF
Location: 131119 - 131868 (+)
Gene ID: HRGMv2_4314_5_109
Type: STP
Location: 131865 - 132767 (+)
Gene ID: HRGMv2_4314_5_110
Type: TC
Location: 132858 - 134750 (+)
Gene ID: HRGMv2_4314_5_111
Type: STP
Location: 134852 - 135115 (+)
Gene ID: HRGMv2_4314_5_112
Type: TC
Location: 135162 - 136862 (+)
Gene ID: HRGMv2_4314_5_113
Type: CAZyme
Location: 137008 - 138849 (-)
Gene ID: HRGMv2_4314_5_114
Type: TF
Location: 138852 - 140483 (-)
Gene ID: HRGMv2_4314_5_115
Type: TC
Location: 140517 - 142322 (-)
Gene ID: HRGMv2_4314_5_116
Type: STP
Location: 142625 - 143968 (+)
Gene ID: HRGMv2_4314_5_117
Type: TC
Location: 144165 - 145367 (+)
Gene ID: HRGMv2_4314_5_118
Type: TC
Location: 145395 - 146231 (+)
Gene ID: HRGMv2_4314_5_119
Type: CAZyme
Location: 146470 - 147639 (+)
Gene ID: HRGMv2_4314_5_120
Type: TC
Location: 147656 - 149698 (+)
Gene ID: HRGMv2_4314_5_121
Type: pfam
Location: 149752 - 150072 (+)
Gene ID: HRGMv2_4314_5_122
Type: TC
Location: 150210 - 151652 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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