Cluster: HRGMv2_4312_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4312
- CGC Family ID: CGCFAM_10576
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4312_7 | HRGMv2_4312_7_5 | 5145 | 6866 | - | 3.D.1.6.2 |
| TC | HRGMv2_4312_7 | HRGMv2_4312_7_6 | 6860 | 8692 | - | 3.D.1.5.1 |
| TF | HRGMv2_4312_7 | HRGMv2_4312_7_7 | 8808 | 9692 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_4312_7 | HRGMv2_4312_7_8 | 9807 | 11873 | + | GH31_1 |
| TF | HRGMv2_4312_7 | HRGMv2_4312_7_9 | 11960 | 12844 | + | HTH_AraC |
| pfam | HRGMv2_4312_7 | HRGMv2_4312_7_10 | 12863 | 13534 | - | ABC2_membrane_5 |
| TC | HRGMv2_4312_7 | HRGMv2_4312_7_11 | 13531 | 14382 | - | 3.A.1.149.1 |
Gene ID: HRGMv2_4312_7_5
Type: TC
Location: 5145 - 6866 (-)
Type: TC
Location: 5145 - 6866 (-)
Gene ID: HRGMv2_4312_7_6
Type: TC
Location: 6860 - 8692 (-)
Type: TC
Location: 6860 - 8692 (-)
Gene ID: HRGMv2_4312_7_7
Type: TF
Location: 8808 - 9692 (-)
Type: TF
Location: 8808 - 9692 (-)
Gene ID: HRGMv2_4312_7_8
Type: CAZyme
Location: 9807 - 11873 (+)
Type: CAZyme
Location: 9807 - 11873 (+)
Gene ID: HRGMv2_4312_7_9
Type: TF
Location: 11960 - 12844 (+)
Type: TF
Location: 11960 - 12844 (+)
Gene ID: HRGMv2_4312_7_10
Type: pfam
Location: 12863 - 13534 (-)
Type: pfam
Location: 12863 - 13534 (-)
Gene ID: HRGMv2_4312_7_11
Type: TC
Location: 13531 - 14382 (-)
Type: TC
Location: 13531 - 14382 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_B
Species
Lachnoclostridium_B sp019423745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.