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Cluster: HRGMv2_4312_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4312_2 HRGMv2_4312_2_80 83588 84418 - 3.A.1.132.3
pfam HRGMv2_4312_2 HRGMv2_4312_2_81 84435 84812 - Ribonuc_L-PSP
pfam HRGMv2_4312_2 HRGMv2_4312_2_82 84815 85765 - Shikimate_DH | OCD_Mu_crystall
TC HRGMv2_4312_2 HRGMv2_4312_2_83 85768 87171 - 2.A.66.1.28
pfam HRGMv2_4312_2 HRGMv2_4312_2_84 87140 88390 - Fe-ADH | Fe-ADH_2 | ADH_Fe_C
CAZyme HRGMv2_4312_2 HRGMv2_4312_2_85 88501 90588 + GH13_11
STP HRGMv2_4312_2 HRGMv2_4312_2_86 90605 91567 - PfkB
pfam HRGMv2_4312_2 HRGMv2_4312_2_87 91741 92928 - DnaJ | DnaJ_CXXCXGXG | DnaJ_C
TC HRGMv2_4312_2 HRGMv2_4312_2_88 93091 94971 - 1.A.33.1.4
Gene ID: HRGMv2_4312_2_80
Type: TC
Location: 83588 - 84418 (-)
Gene ID: HRGMv2_4312_2_81
Type: pfam
Location: 84435 - 84812 (-)
Gene ID: HRGMv2_4312_2_82
Type: pfam
Location: 84815 - 85765 (-)
Gene ID: HRGMv2_4312_2_83
Type: TC
Location: 85768 - 87171 (-)
Gene ID: HRGMv2_4312_2_84
Type: pfam
Location: 87140 - 88390 (-)
Gene ID: HRGMv2_4312_2_85
Type: CAZyme
Location: 88501 - 90588 (+)
Gene ID: HRGMv2_4312_2_86
Type: STP
Location: 90605 - 91567 (-)
Gene ID: HRGMv2_4312_2_87
Type: pfam
Location: 91741 - 92928 (-)
Gene ID: HRGMv2_4312_2_88
Type: TC
Location: 93091 - 94971 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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