dbCAN Logo

Cluster: HRGMv2_4312_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4312_23 HRGMv2_4312_23_28 25909 27624 - 8.A.7.1.1
STP HRGMv2_4312_23 HRGMv2_4312_23_29 27638 27895 - PTS-HPr
CAZyme HRGMv2_4312_23 HRGMv2_4312_23_30 27912 29558 - GH13_29
TC HRGMv2_4312_23 HRGMv2_4312_23_31 29574 31559 - 4.A.1.2.13
TF HRGMv2_4312_23 HRGMv2_4312_23_32 31834 32583 + GntR
CAZyme HRGMv2_4312_23 HRGMv2_4312_23_33 32580 33989 - GH32
TC HRGMv2_4312_23 HRGMv2_4312_23_34 34008 36083 - 4.A.1.2.12
TF HRGMv2_4312_23 HRGMv2_4312_23_35 36096 37067 - LacI
pfam HRGMv2_4312_23 HRGMv2_4312_23_36 37057 37971 - 2-Hacid_dh | 2-Hacid_dh_C
TC HRGMv2_4312_23 HRGMv2_4312_23_37 38059 38658 - 8.A.5.1.6
TC HRGMv2_4312_23 HRGMv2_4312_23_38 38704 39096 - 8.A.5.1.6
TF HRGMv2_4312_23 HRGMv2_4312_23_39 39251 40123 - HTH_1
TC HRGMv2_4312_23 HRGMv2_4312_23_40 40370 41689 - 4.A.2.1.17
Gene ID: HRGMv2_4312_23_28
Type: TC
Location: 25909 - 27624 (-)
Gene ID: HRGMv2_4312_23_29
Type: STP
Location: 27638 - 27895 (-)
Gene ID: HRGMv2_4312_23_30
Type: CAZyme
Location: 27912 - 29558 (-)
Gene ID: HRGMv2_4312_23_31
Type: TC
Location: 29574 - 31559 (-)
Gene ID: HRGMv2_4312_23_32
Type: TF
Location: 31834 - 32583 (+)
Gene ID: HRGMv2_4312_23_33
Type: CAZyme
Location: 32580 - 33989 (-)
Gene ID: HRGMv2_4312_23_34
Type: TC
Location: 34008 - 36083 (-)
Gene ID: HRGMv2_4312_23_35
Type: TF
Location: 36096 - 37067 (-)
Gene ID: HRGMv2_4312_23_36
Type: pfam
Location: 37057 - 37971 (-)
Gene ID: HRGMv2_4312_23_37
Type: TC
Location: 38059 - 38658 (-)
Gene ID: HRGMv2_4312_23_38
Type: TC
Location: 38704 - 39096 (-)
Gene ID: HRGMv2_4312_23_39
Type: TF
Location: 39251 - 40123 (-)
Gene ID: HRGMv2_4312_23_40
Type: TC
Location: 40370 - 41689 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List