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Cluster: HRGMv2_4311_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4311_22 HRGMv2_4311_22_2 1522 2088 + 3.A.1.25.2
pfam HRGMv2_4311_22 HRGMv2_4311_22_3 2191 3141 + A_deaminase | Amidohydro_3
pfam HRGMv2_4311_22 HRGMv2_4311_22_4 3224 3979 + Exo_endo_phos
TC HRGMv2_4311_22 HRGMv2_4311_22_5 3993 5822 + 3.A.1.120.6
CAZyme HRGMv2_4311_22 HRGMv2_4311_22_6 5862 7853 + GH13_11
pfam HRGMv2_4311_22 HRGMv2_4311_22_7 7860 8339 - LuxS
TF HRGMv2_4311_22 HRGMv2_4311_22_8 8779 9225 + MarR
TC HRGMv2_4311_22 HRGMv2_4311_22_9 9255 11009 + 3.A.1.135.5
TC HRGMv2_4311_22 HRGMv2_4311_22_10 10993 12903 + 3.A.1.135.5
Gene ID: HRGMv2_4311_22_2
Type: TC
Location: 1522 - 2088 (+)
Gene ID: HRGMv2_4311_22_3
Type: pfam
Location: 2191 - 3141 (+)
Gene ID: HRGMv2_4311_22_4
Type: pfam
Location: 3224 - 3979 (+)
Gene ID: HRGMv2_4311_22_5
Type: TC
Location: 3993 - 5822 (+)
Gene ID: HRGMv2_4311_22_6
Type: CAZyme
Location: 5862 - 7853 (+)
Gene ID: HRGMv2_4311_22_7
Type: pfam
Location: 7860 - 8339 (-)
Gene ID: HRGMv2_4311_22_8
Type: TF
Location: 8779 - 9225 (+)
Gene ID: HRGMv2_4311_22_9
Type: TC
Location: 9255 - 11009 (+)
Gene ID: HRGMv2_4311_22_10
Type: TC
Location: 10993 - 12903 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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