Cluster: HRGMv2_4311_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4311
- CGC Family ID: CGCFAM_01711
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4311_11 | HRGMv2_4311_11_1 | 2 | 1093 | - | 3.A.2.1.5 |
| pfam | HRGMv2_4311_11 | HRGMv2_4311_11_2 | 1096 | 1584 | - | ATP-synt_B |
| TC | HRGMv2_4311_11 | HRGMv2_4311_11_3 | 1719 | 2039 | - | 3.A.2.1.5 |
| TC | HRGMv2_4311_11 | HRGMv2_4311_11_4 | 2068 | 2757 | - | 3.A.2.1.5 |
| CAZyme | HRGMv2_4311_11 | HRGMv2_4311_11_5 | 2939 | 5212 | + | GH25 |
Gene ID: HRGMv2_4311_11_1
Type: TC
Location: 2 - 1093 (-)
Type: TC
Location: 2 - 1093 (-)
Gene ID: HRGMv2_4311_11_2
Type: pfam
Location: 1096 - 1584 (-)
Type: pfam
Location: 1096 - 1584 (-)
Gene ID: HRGMv2_4311_11_3
Type: TC
Location: 1719 - 2039 (-)
Type: TC
Location: 1719 - 2039 (-)
Gene ID: HRGMv2_4311_11_4
Type: TC
Location: 2068 - 2757 (-)
Type: TC
Location: 2068 - 2757 (-)
Gene ID: HRGMv2_4311_11_5
Type: CAZyme
Location: 2939 - 5212 (+)
Type: CAZyme
Location: 2939 - 5212 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Copromonas
Species
Copromonas avistercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.