Cluster: HRGMv2_4311_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4311
- CGC Family ID: CGCFAM_00342
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4311_8 | HRGMv2_4311_8_9 | 9398 | 10510 | - | 3.A.1.1.24 |
| CAZyme | HRGMv2_4311_8 | HRGMv2_4311_8_10 | 10541 | 12424 | - | GH13_4 |
| pfam | HRGMv2_4311_8 | HRGMv2_4311_8_11 | 12429 | 12884 | - | DUF6106 |
| CAZyme | HRGMv2_4311_8 | HRGMv2_4311_8_12 | 12881 | 15088 | - | GH36 |
| TC | HRGMv2_4311_8 | HRGMv2_4311_8_13 | 15094 | 15930 | - | 3.A.1.1.34 |
| TC | HRGMv2_4311_8 | HRGMv2_4311_8_14 | 15945 | 16841 | - | 3.A.1.1.11 |
| TC | HRGMv2_4311_8 | HRGMv2_4311_8_15 | 16858 | 18153 | - | 3.A.1.1.44 |
Gene ID: HRGMv2_4311_8_9
Type: TC
Location: 9398 - 10510 (-)
Type: TC
Location: 9398 - 10510 (-)
Gene ID: HRGMv2_4311_8_10
Type: CAZyme
Location: 10541 - 12424 (-)
Type: CAZyme
Location: 10541 - 12424 (-)
Gene ID: HRGMv2_4311_8_11
Type: pfam
Location: 12429 - 12884 (-)
Type: pfam
Location: 12429 - 12884 (-)
Gene ID: HRGMv2_4311_8_12
Type: CAZyme
Location: 12881 - 15088 (-)
Type: CAZyme
Location: 12881 - 15088 (-)
Gene ID: HRGMv2_4311_8_13
Type: TC
Location: 15094 - 15930 (-)
Type: TC
Location: 15094 - 15930 (-)
Gene ID: HRGMv2_4311_8_14
Type: TC
Location: 15945 - 16841 (-)
Type: TC
Location: 15945 - 16841 (-)
Gene ID: HRGMv2_4311_8_15
Type: TC
Location: 16858 - 18153 (-)
Type: TC
Location: 16858 - 18153 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Copromonas
Species
Copromonas avistercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.