Cluster: HRGMv2_4311_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4311
- CGC Family ID: CGCFAM_02316
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4311_7 | HRGMv2_4311_7_13 | 10460 | 11815 | + | 2.A.66.1.33 |
| STP | HRGMv2_4311_7 | HRGMv2_4311_7_14 | 11920 | 14214 | - | HATPase_c | HisKA |
| TF | HRGMv2_4311_7 | HRGMv2_4311_7_15 | 14226 | 14921 | - | Trans_reg_C |
| CAZyme | HRGMv2_4311_7 | HRGMv2_4311_7_16 | 15305 | 17251 | - | CBM48 | GH13_9 |
| CAZyme | HRGMv2_4311_7 | HRGMv2_4311_7_17 | 17298 | 18668 | - | GH13_20 |
Gene ID: HRGMv2_4311_7_13
Type: TC
Location: 10460 - 11815 (+)
Type: TC
Location: 10460 - 11815 (+)
Gene ID: HRGMv2_4311_7_14
Type: STP
Location: 11920 - 14214 (-)
Type: STP
Location: 11920 - 14214 (-)
Gene ID: HRGMv2_4311_7_15
Type: TF
Location: 14226 - 14921 (-)
Type: TF
Location: 14226 - 14921 (-)
Gene ID: HRGMv2_4311_7_16
Type: CAZyme
Location: 15305 - 17251 (-)
Type: CAZyme
Location: 15305 - 17251 (-)
Gene ID: HRGMv2_4311_7_17
Type: CAZyme
Location: 17298 - 18668 (-)
Type: CAZyme
Location: 17298 - 18668 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Copromonas
Species
Copromonas avistercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.