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Cluster: HRGMv2_4309_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4309_3 HRGMv2_4309_3_5 6541 7422 + 3.A.1.1.20
TC HRGMv2_4309_3 HRGMv2_4309_3_6 7419 8267 + 3.A.1.1.18
CAZyme HRGMv2_4309_3 HRGMv2_4309_3_7 8311 9672 + GH32
pfam HRGMv2_4309_3 HRGMv2_4309_3_8 9699 10745 + GFO_IDH_MocA | GFO_IDH_MocA_C3
pfam HRGMv2_4309_3 HRGMv2_4309_3_9 10824 11672 + Shikimate_DH | Shikimate_dh_N | SDH_C
TC HRGMv2_4309_3 HRGMv2_4309_3_10 11878 13431 + 2.A.21.2.4
TC HRGMv2_4309_3 HRGMv2_4309_3_11 13560 14924 - 2.A.66.1.33
pfam HRGMv2_4309_3 HRGMv2_4309_3_12 15124 16098 + Amidase_3 | Choline_bind_3
TC HRGMv2_4309_3 HRGMv2_4309_3_13 16111 17451 + 2.A.66.1.32
pfam HRGMv2_4309_3 HRGMv2_4309_3_14 17622 18518 + PBP_like_2 | PBP_like_2 | SBP_bac_11
TC HRGMv2_4309_3 HRGMv2_4309_3_15 18706 19563 + 3.A.1.7.5
TC HRGMv2_4309_3 HRGMv2_4309_3_16 19553 20461 + 3.A.1.7.5
TC HRGMv2_4309_3 HRGMv2_4309_3_17 20467 21225 + 3.A.1.7.5
Gene ID: HRGMv2_4309_3_5
Type: TC
Location: 6541 - 7422 (+)
Gene ID: HRGMv2_4309_3_6
Type: TC
Location: 7419 - 8267 (+)
Gene ID: HRGMv2_4309_3_7
Type: CAZyme
Location: 8311 - 9672 (+)
Gene ID: HRGMv2_4309_3_8
Type: pfam
Location: 9699 - 10745 (+)
Gene ID: HRGMv2_4309_3_9
Type: pfam
Location: 10824 - 11672 (+)
Gene ID: HRGMv2_4309_3_10
Type: TC
Location: 11878 - 13431 (+)
Gene ID: HRGMv2_4309_3_11
Type: TC
Location: 13560 - 14924 (-)
Gene ID: HRGMv2_4309_3_12
Type: pfam
Location: 15124 - 16098 (+)
Gene ID: HRGMv2_4309_3_13
Type: TC
Location: 16111 - 17451 (+)
Gene ID: HRGMv2_4309_3_14
Type: pfam
Location: 17622 - 18518 (+)
Gene ID: HRGMv2_4309_3_15
Type: TC
Location: 18706 - 19563 (+)
Gene ID: HRGMv2_4309_3_16
Type: TC
Location: 19553 - 20461 (+)
Gene ID: HRGMv2_4309_3_17
Type: TC
Location: 20467 - 21225 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4309_3_15 vegan > omnivore 1.45352 0.01684
HRGMv2_4309_3_16 vegan > omnivore 1.92318 0.01684

🧭 Explore Read Mapping of CGC

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