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Cluster: HRGMv2_4309_CGC47

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4309_29 HRGMv2_4309_29_4 2138 3127 + 3.A.1.2.11
TC HRGMv2_4309_29 HRGMv2_4309_29_5 3189 4706 + 3.A.1.2.20
TC HRGMv2_4309_29 HRGMv2_4309_29_6 4703 5662 + 3.A.1.2.15
CAZyme HRGMv2_4309_29 HRGMv2_4309_29_7 5716 6834 + GH179
pfam HRGMv2_4309_29 HRGMv2_4309_29_8 6845 7474 + LacAB_rpiB
TF HRGMv2_4309_29 HRGMv2_4309_29_9 7487 8239 + MarR
TC HRGMv2_4309_29 HRGMv2_4309_29_10 8251 9879 + 4.C.1.1.4
Gene ID: HRGMv2_4309_29_4
Type: TC
Location: 2138 - 3127 (+)
Gene ID: HRGMv2_4309_29_5
Type: TC
Location: 3189 - 4706 (+)
Gene ID: HRGMv2_4309_29_6
Type: TC
Location: 4703 - 5662 (+)
Gene ID: HRGMv2_4309_29_7
Type: CAZyme
Location: 5716 - 6834 (+)
Gene ID: HRGMv2_4309_29_8
Type: pfam
Location: 6845 - 7474 (+)
Gene ID: HRGMv2_4309_29_9
Type: TF
Location: 7487 - 8239 (+)
Gene ID: HRGMv2_4309_29_10
Type: TC
Location: 8251 - 9879 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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