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Cluster: HRGMv2_4309_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4309_20 HRGMv2_4309_20_7 4772 5290 + 3.D.1.8.1
TC HRGMv2_4309_20 HRGMv2_4309_20_8 5334 7283 - 9.B.97.5.1
pfam HRGMv2_4309_20 HRGMv2_4309_20_9 7334 8011 - Lyx_isomer
pfam HRGMv2_4309_20 HRGMv2_4309_20_10 8054 8710 - UPF0029 | DUF1949
CAZyme HRGMv2_4309_20 HRGMv2_4309_20_11 9018 11612 + GT51
pfam HRGMv2_4309_20 HRGMv2_4309_20_12 11667 12599 - Hpr_kinase_N | Hpr_kinase_C
pfam HRGMv2_4309_20 HRGMv2_4309_20_13 12596 14485 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_4309_20 HRGMv2_4309_20_14 14551 16539 - 3.A.16.1.2
Gene ID: HRGMv2_4309_20_7
Type: TC
Location: 4772 - 5290 (+)
Gene ID: HRGMv2_4309_20_8
Type: TC
Location: 5334 - 7283 (-)
Gene ID: HRGMv2_4309_20_9
Type: pfam
Location: 7334 - 8011 (-)
Gene ID: HRGMv2_4309_20_10
Type: pfam
Location: 8054 - 8710 (-)
Gene ID: HRGMv2_4309_20_11
Type: CAZyme
Location: 9018 - 11612 (+)
Gene ID: HRGMv2_4309_20_12
Type: pfam
Location: 11667 - 12599 (-)
Gene ID: HRGMv2_4309_20_13
Type: pfam
Location: 12596 - 14485 (-)
Gene ID: HRGMv2_4309_20_14
Type: TC
Location: 14551 - 16539 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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